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AT3G45530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.608
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G27473.1); Has 1872 Blast hits to 663 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1850; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
EMBL:AL138657EMBL:CP002686EnsemblPlants:AT3G45530EnsemblPlants:AT3G45530.1
entrez:823694GeneID:823694GO:GO:0005622GO:GO:0008270
GO:GO:0035556GO:GO:0047134Gramene:AT3G45530.1hmmpanther:PTHR32410
hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693InterPro:IPR001965InterPro:IPR002219
InterPro:IPR004146InterPro:IPR011424KEGG:ath:AT3G45530Pfam:PF03107
Pfam:PF07649Pfscan:PS50081PhylomeDB:Q9M1F4PIR:T47493
PROSITE:PS50081Proteomes:UP000006548RefSeq:NP_190139.1SMART:SM00249
SMR:Q9M1F4SUPFAM:SSF57889TAIR:AT3G45530UniGene:At.50248
UniProt:Q9M1F4
Coordinates (TAIR10) chr3:-:16701133..16703335
Molecular Weight (calculated) 78512.30 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.18
Length 692 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFKIKGHPH RVSLVKNHDG LECDACDQSY GDAYSCGECK FTVHKKCTFL FEVVPEIFEH PSHVGHCLKL LTTGAPDHTV PKCHLCGKNT KRLLYHCRDC
101: KLNVDIDCII DPMCAQADLN MPWHHHPLFM GNFATNMTCD VCYDNHVDGY ICLCCRLFVG WVCAALVIDS PEITHPCHTK HPLKLLTEGA PTYTDPKCHL
201: CGEDTGKFIY HCDICKFNLD LVCAKTKTPP VALSNLKVHE HTLNLMPRLI SFVCDACGTK GDRAPYVCHQ CDFMVHKKCA HLPRVINVNH HDHRVSFKYP
301: LGLGEWRCGV CFEEIDWSCG AYSCSLCPQY AIHSLCATRK DVWNGKELDG VPEEVEDIEP FKRNDDNTIT HFAHEHNLMS LSKDGEESSL CGACVLPIGS
401: YTFYKCSKSN CSFILHEKCA NISKKKRHFL SSEPLILCFE SIIDDDFLCR ACYQMFCEGF FYSSKGVNFD LICSSITMPF IHGSHDHHLL YVKQEEGNKK
501: TCHNCDNERA KVLLGCIKCN YFLDFRCATM PLTIMLPRYD DHPLTLCYGE EKASGKYWCD ICERETNPET WFYTCNDCGV TLHTFCVLGD IRNAKAGGSF
601: RHHGELELLP NNRSTRPLCN SCHSRCPGSF IMKSYDGGEV YCSCYCVSSQ LGYTYKGADT CPPWAIYELE LIVVIHVNYL STYILHYLTA IK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)