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AT3G45300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : isovaleryl-CoA-dehydrogenase
Curator
Summary (TAIR10)
Encodes isovaleryl-coenzyme a dehydrogenase. Mutants have increases in 12 seed free amino acids, accumulation of seed homomethionine and 3-isovaleroyloxypropyl-glucosinolate, with a concomitant decrease in seed 3-benzoyloxypropyl-glucosinolate.
Computational
Description (TAIR10)
isovaleryl-CoA-dehydrogenase (IVD); FUNCTIONS IN: isovaleryl-CoA dehydrogenase activity, ATP binding; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA dehydrogenase, conserved site (InterPro:IPR006089), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092); BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 4 (TAIR:AT3G51840.1); Has 45583 Blast hits to 45129 proteins in 2067 species: Archae - 559; Bacteria - 29477; Metazoa - 1687; Fungi - 835; Plants - 308; Viruses - 0; Other Eukaryotes - 12717 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNMYeggNOG:KOG0141EMBL:AK229130EMBL:CP002686EnsemblPlants:AT3G45300EnsemblPlants:AT3G45300.1entrez:823668
ExpressionAtlas:Q0WPE4Gene3D:1.10.540.10GeneID:823668GO:GO:0003995GO:GO:0009083GO:GO:0050660Gramene:AT3G45300.1
gramene_pathway:1.3.99.10gramene_pathway:1.3.99.12gramene_pathway:LEU-DEG2-PWYgramene_pathway:VALDEG-PWYhmmpanther:PTHR10909hmmpanther:PTHR10909:SF332InterPro:IPR006089
InterPro:IPR006091InterPro:IPR009075InterPro:IPR009100InterPro:IPR013786KEGG:ath:AT3G45300KO:K00253OMA:IPYLHTR
PaxDb:Q0WPE4Pfam:PF00441Pfam:PF02770Pfam:PF02771Pfam:Q9SWG0PhylomeDB:Q0WPE4PRIDE:Q0WPE4
PROSITE:PS00072PROSITE:PS00073ProteinModelPortal:Q0WPE4RefSeq:NP_190116.1scanprosite:PS00072scanprosite:PS00073SMR:Q0WPE4
STRING:3702.AT3G45300.1SUPFAM:SSF47203SUPFAM:SSF56645TAIR:AT3G45300tair10-symbols:ATIVDtair10-symbols:IVDtair10-symbols:IVDH
UniGene:At.428UniProt:Q0WPE4UniProt:Q9SWG0
Coordinates (TAIR10) chr3:-:16621659..16624848
Molecular Weight (calculated) 44775.70 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.20
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRFFSARSI LGYAVKTRRR SFSSRSSSLL FDDTQLQFKE SVSKFAQDNI APHAERIDKT NSFPKDVNLW KLMGEFNLHG ITAPEEYGGL GLGYLYHCIA
101: MEEISRASGS VALSYGAHSN LCINQLVRNG TAAQKEKYLP KLISGEHVGA LAMSEPNAGS DVVGMKCKAE KVDGGYILNG NKMWCTNGPS AETLVVYAKT
201: DTKAGSKGIT AFIIEKGMTG FSTAQKLDKL GMRGSDTCEL VFENCFVPEE NILDKEGKGV YVLMSGLDLE RLVLAAGPLG IMQACLDNVL PYIRQREQFG
301: RPVGEFQFIQ GKVADMYTAL QSSRSYVYSV ARDCDNGKVD PKDCAGTILC AAERATQVAL QAIQCLGGNG YINEYATGRL LRDAKLYEIG AGTSEIRRIV
401: IGRELFKEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)