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AT3G45240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.524
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : geminivirus rep interacting kinase 1
Curator
Summary (TAIR10)
Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.
Computational
Description (TAIR10)
geminivirus rep interacting kinase 1 (GRIK1); CONTAINS InterPro DOMAIN/s: Calcium/calmodulin-dependent protein kinase kinase (InterPro:IPR020657), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: geminivirus rep interacting kinase 2 (TAIR:AT5G60550.1); Has 117743 Blast hits to 115793 proteins in 4740 species: Archae - 114; Bacteria - 14389; Metazoa - 44129; Fungi - 12221; Plants - 26959; Viruses - 496; Other Eukaryotes - 19435 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G45240-MONOMERBioCyc:ARA:GQT-213-MONOMERBioCyc:ARA:GQT-214-MONOMEREC:2.7.11.1
eggNOG:ENOG410YHHFeggNOG:KOG0585EMBL:AL132953EMBL:AL138649
EMBL:AM489731EMBL:AY035070EMBL:AY056309EMBL:CP002686
EnsemblPlants:AT3G45240EnsemblPlants:AT3G45240.1EnsemblPlants:AT3G45240.2entrez:823660
ExpressionAtlas:Q93V58GeneID:823660Genevisible:Q93V58GO:GO:0004674
GO:GO:0005524GO:GO:0005634GO:GO:0005737GO:GO:0006468
GO:GO:0009615GO:GO:0016032GO:GO:0016301GO:GO:0046777
hmmpanther:PTHR24347hmmpanther:PTHR24347:SF1HOGENOM:HOG000233016InParanoid:Q93V58
IntAct:Q93V58InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR017441InterPro:IPR020636iPTMnet:Q93V58KEGG:ath:AT3G45240
KO:K07359OMA:NEYVREYPANTHER:PTHR24347PaxDb:Q93V58
Pfam:PF00069Pfam:Q93V58Pfscan:PS50011PhylomeDB:Q93V58
PIR:T47464PRIDE:Q93V58PRO:PR:Q93V58PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q93V58Proteomes:UP000006548
Reactome:R-ATH-442717RefSeq:NP_001030811.1RefSeq:NP_566876.3scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:Q93V58STRING:3702.AT3G45240.1
SUPFAM:SSF56112SwissPalm:Q93V58TAIR:AT3G45240tair10-symbols:ATSNAK2
tair10-symbols:GRIK1UniGene:At.21488UniProt:Q93V58
Coordinates (TAIR10) chr3:-:16570774..16572902
Molecular Weight (calculated) 44575.30 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.53
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MFCDSFAFAQ VMSCFGCFGG SERSRHSPNP YDDDTYSHDS GETSNPGGDD EEGEEEEEVE ELSRSKRSEE ILKCKLQNGL VCRQFPVKET NKLTRGEDED
101: GNKTINEFVR ERKIGSGSYG KVVLYRSTVD DKHYAIKAFH KSHLSRLRVA PSETAMGDVL REVMIMKTLE HPNIVNLIEV IDDPEFDDFY MVLEYVDGKW
201: AYDDSGPPGA LGEITARKYL RDVVAGLMYL HAHNVIHGDI KPDNLLVTST GRVKIGDFSV SQVFKDDDDQ LRRSPGTPVF TAPECCLGIT YSGRSADTWA
301: VGVTLYCMIL GQYPFLGDTL QDTYDKIVHN PLIIPEGLNP RLRDLIEGLL CKDPNQRMTL KAVAEHPWIT GEDGAISEYC CWCKRKAEEE EDQNHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)