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AT3G45230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G60630.1); Has 9394 Blast hits to 3408 proteins in 532 species: Archae - 18; Bacteria - 1025; Metazoa - 764; Fungi - 595; Plants - 1828; Viruses - 505; Other Eukaryotes - 4659 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5GZeggNOG:ENOG410Z7VWEMBL:AL138649EMBL:CP002686
EnsemblPlants:AT3G45230EnsemblPlants:AT3G45230.1entrez:823659GeneID:823659
GO:GO:0009505GO:GO:0016021Gramene:AT3G45230.1KEGG:ath:AT3G45230
OMA:DISHESTPIR:T47463Proteomes:UP000006548RefSeq:NP_190109.1
STRING:3702.AT3G45230.1TAIR:AT3G45230TMHMM:TMhelixUniGene:At.36057
UniProt:Q9M1T6
Coordinates (TAIR10) chr3:+:16569123..16569650
Molecular Weight (calculated) 17946.10 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.25
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLEFIIVAM MLSLVLVSGE ILTKSSPAPS PDLADSPLIH ASPPSKLGSH NSPAESPIEY SSPPEPETEH SPSPSPANSP SVSPPLPNDS QSPSSSASPS
101: PSPEASDVNH SDITGIEGEK LPSGSGGGMS GGKKVGVAFG AIAAVCVVGV AGFVYKKRQE NIRRSRYGYA AREIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)