AT3G45190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.813 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SIT4 phosphatase-associated family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 1154 Blast hits to 1024 proteins in 229 species: Archae - 4; Bacteria - 93; Metazoa - 408; Fungi - 293; Plants - 121; Viruses - 2; Other Eukaryotes - 233 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16541994..16548161 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87644.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.17 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||
| Length | 789 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFWKLTALSA ASPVESILDK EDFTLEELLD EEDIIQECRA LNSRLINFLR ERAQVEQLLR FIVEESPEDA DSKRAFKFPF ISSEVLTCEI DVILKTLVDE 101: EELMNLLFSF LEPNRSHSVM LAGYFSKVVI CLMLRKTVPL MNYVKAHQNV FQQLVDLIGI TSIMEVLIRL VGADDHVYPN HLDVMQWLAD SNLLEMIVDK 201: LSPSNSLEVH ANAAETLCTI AQNAPSPLAT KLSSSSFVAR IFGHAFEDPQ SKSSLVHTLS VCISLLSPRR SVVSSPFMYS FRGQQIFESP ISVNPETIAT 301: MLPRLGDFVA LLNVTSDEKI LPTTYGQLRP PLGSHRLKIV EFIAVLLKTR SEATGKELAS SGAIRRVLDL FFEYPYNNAL HHQVESIILS CLESKNDEIV 401: DHLLRECDLI GKIIKTEKQP ILSGDKQPTL AAAGKQAPRV GNVGHISRIS NKLVQLSTNS NQIKTLLEEN NDWGEWEANT LHDRNAVENV YRWVCGRPTA 501: LHDRTRDSDD DEVHDRDYDL AGLANNLNQF RYNMQENNGA GEEHGSNDRD EEDVYFDDES AEVVISSLRL GDEQANNLFT NSNWFTFQGD ELGENTGTGA 601: ISSEEAMEDV SLNETSDGGD EEDEDEDCLI TESKNPFVDS TAATASTSEA VSVDADIEID EDVGTDELSP EWVERNDSSS AIAPGSTDDV KMPDVRIPNG 701: SSSSEGEISP RSPPVPSLFG KDVEFVGVEP EGTERAMDQA LKEGIVGEAG PMKRNTTTAS PGKESPDDSM QEYNDTNYWK VDQEVTVVE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)