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AT3G45140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30309965 (2018): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23673981 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19676087 (2009): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : lipoxygenase 2
Curator
Summary (TAIR10)
Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection.
Computational
Description (TAIR10)
lipoxygenase 2 (LOX2); FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 7 processes; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G67560.1); Has 1459 Blast hits to 1423 proteins in 177 species: Archae - 0; Bacteria - 74; Metazoa - 524; Fungi - 48; Plants - 784; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT3G45140-MONOMERBioGrid:8970BRENDA:1.13.11.12EC:1.13.11.12
eggNOG:ENOG410IIW1eggNOG:ENOG410YN4NEMBL:AK119093EMBL:AK222075
EMBL:AK230124EMBL:AL138649EMBL:AY062611EMBL:CP002686
EMBL:L23968EnsemblPlants:AT3G45140EnsemblPlants:AT3G45140.1entrez:823650
Gene3D:2.60.60.20Gene3D:4.10.372.10GeneID:823650Genevisible:P38418
GO:GO:0005737GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009611GO:GO:0009617GO:GO:0009620GO:GO:0009695
GO:GO:0009753GO:GO:0009941GO:GO:0016165GO:GO:0031408
GO:GO:0034440GO:GO:0046872GO:GO:0080027Gramene:AT3G45140.1
gramene_pathway:1.13.11.12gramene_pathway:PWY-5410gramene_pathway:PWY-735gramene_plant_reactome:1119332
gramene_plant_reactome:1119618gramene_plant_reactome:6873531gramene_plant_reactome:6875204hmmpanther:PTHR11771
hmmpanther:PTHR11771:SF42HOGENOM:HOG000230469InParanoid:P38418IntAct:P38418
InterPro:IPR000907InterPro:IPR001024InterPro:IPR001246InterPro:IPR013819
InterPro:IPR020833InterPro:IPR020834InterPro:IPR027433iPTMnet:P38418
KEGG:ath:AT3G45140KO:K00454OMA:PANIQSRPANTHER:PTHR11771
PaxDb:P38418Pfam:P38418Pfam:PF00305Pfam:PF01477
Pfscan:PS50095Pfscan:PS51393PhylomeDB:P38418PIR:JQ2391
PIR:T47454PRIDE:P38418PRINTS:PR00087PRINTS:PR00468
PRO:PR:P38418PROSITE:PS00081PROSITE:PS00711PROSITE:PS50095
PROSITE:PS51393ProteinModelPortal:P38418Proteomes:UP000006548Reactome:R-ATH-2142691
Reactome:R-ATH-2142696Reactome:R-ATH-2142700Reactome:R-ATH-2142712Reactome:R-ATH-2142770
RefSeq:NP_566875.1scanprosite:PS00081scanprosite:PS00711SMART:SM00308
SMR:P38418STRING:3702.AT3G45140.1SUPFAM:SSF48484SUPFAM:SSF49723
SWISS-2DPAGE:P38418TAIR:AT3G45140tair10-symbols:ATLOX2tair10-symbols:LOX2
UniGene:At.22079UniGene:At.75027UniPathway:UPA00382UniProt:P38418
Coordinates (TAIR10) chr3:+:16525437..16529233
Molecular Weight (calculated) 102051.00 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.47
Length 896 amino acids
Sequence (TAIR10)
(BLAST)
001: MYCRESLSSL QTLNVAKSLS SLFPKQSALI NPISAGRRNN LPRPNLRRRC KVTASRANIE QEGNTVKEPI QNIKVKGYIT AQEEFLEGIT WSRGLDDIAD
101: IRGRSLLVEL ISAKTDQRIT VEDYAQRVWA EAPDEKYECE FEMPEDFGPV GAIKIQNQYH RQLFLKGVEL KLPGGSITFT CESWVAPKSV DPTKRIFFSD
201: KSYLPSQTPE PLKKYRKEEL ETLQGKNREE VGEFTKFERI YDYDVYNDVG DPDNDPELAR PVIGGLTHPY PRRCKTGRKP CETDPSSEQR YGGEFYVPRD
301: EEFSTAKGTS FTGKAVLAAL PSIFPQIESV LLSPQEPFPH FKAIQNLFEE GIQLPKDAGL LPLLPRIIKA LGEAQDDILQ FDAPVLINRD RFSWLRDDEF
401: ARQTLAGLNP YSIQLVEEWP LISKLDPAVY GDPTSLITWE IVEREVKGNM TVDEALKNKR LFVLDYHDLL LPYVNKVREL NNTTLYASRT LFFLSDDSTL
501: RPVAIELTCP PNINKPQWKQ VFTPGYDATS CWLWNLAKTH AISHDAGYHQ LISHWLRTHA CTEPYIIAAN RQLSAMHPIY RLLHPHFRYT MEINARARQS
601: LVNGGGIIET CFWPGKYALE LSSAVYGKLW RFDQEGLPAD LIKRGLAEED KTAEHGVRLT IPDYPFANDG LILWDAIKEW VTDYVKHYYP DEELITSDEE
701: LQGWWSEVRN IGHGDKKDEP WWPVLKTQDD LIGVVTTIAW VTSGHHAAVN FGQYGYGGYF PNRPTTTRIR MPTEDPTDEA LKEFYESPEK VLLKTYPSQK
801: QATLVMVTLD LLSTHSPDEE YIGEQQEASW ANEPVINAAF ERFKGKLQYL EGVIDERNVN ITLKNRAGAG VVKYELLKPT SEHGVTGMGV PYSISI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)