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AT3G45050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1X5eggNOG:ENOG4112BMREMBL:AK118591EMBL:BT025638
EMBL:CP002686EnsemblPlants:AT3G45050EnsemblPlants:AT3G45050.1entrez:823640
ExpressionAtlas:Q8GWW5GeneID:823640GO:GO:0016021Gramene:AT3G45050.1
hmmpanther:PTHR37230hmmpanther:PTHR37230:SF1HOGENOM:HOG000090025PhylomeDB:Q8GWW5
Proteomes:UP000006548RefSeq:NP_850656.1STRING:3702.AT3G45050.2TAIR:AT3G45050
TMHMM:TMhelixUniGene:At.48735UniGene:At.71157UniProt:Q8GWW5
Coordinates (TAIR10) chr3:+:16476023..16476939
Molecular Weight (calculated) 13751.60 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.01
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSLIKLQS FSFPSSVSSV KDVRFLNLDL KSSHQRAKRS STVVPALAET AVSIAIAATV VGTAATILVR RNNKASEEAE ASMKECEACL GSGICPECKG
101: EGFVLKKLSD ANAEKARLAA KNMATRYTAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)