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AT3G44880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22366162 (2012): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
Curator
Summary (TAIR10)
Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.
Computational
Description (TAIR10)
ACCELERATED CELL DEATH 1 (ACD1); FUNCTIONS IN: iron-sulfur cluster binding, pheophorbide a oxygenase activity; INVOLVED IN: flower development, cell death, chlorophyll catabolic process, defense response to bacterium, incompatible interaction, fruit development; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: ACD1-like (TAIR:AT4G25650.1); Has 4072 Blast hits to 4065 proteins in 685 species: Archae - 4; Bacteria - 2839; Metazoa - 50; Fungi - 15; Plants - 409; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G44880-MONOMERBioCyc:MetaCyc:AT3G44880-MONOMERBioGrid:8942BRENDA:1.14.12.20EC:1.14.15.17eggNOG:COG4638eggNOG:ENOG410IIPC
EMBL:AL391254EMBL:AY093092EMBL:AY344061EMBL:CP002686EMBL:U77347EnsemblPlants:AT3G44880EnsemblPlants:AT3G44880.1
entrez:823622Gene3D:2.102.10.10GeneID:823622Genevisible:Q9FYC2GO:GO:0008219GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009706GO:GO:0009816GO:GO:0009908GO:GO:0009941GO:GO:0010154GO:GO:0010277
GO:GO:0015996GO:GO:0032441GO:GO:0046872GO:GO:0051536GO:GO:0051537Gramene:AT3G44880.1gramene_pathway:1.14.12.20
gramene_pathway:PWY-5098hmmpanther:PTHR21266hmmpanther:PTHR21266:SF24HOGENOM:HOG000239731InParanoid:Q9FYC2IntAct:Q9FYC2InterPro:IPR013626
InterPro:IPR017941KEGG:ath:AT3G44880KO:K13071OMA:SQPEWFGPaxDb:Q9FYC2Pfam:PF00355Pfam:PF08417
Pfam:Q9FYC2Pfscan:PS51296PhylomeDB:Q9FYC2PIR:T51785PRIDE:Q9FYC2PRO:PR:Q9FYC2PROSITE:PS51296
ProteinModelPortal:Q9FYC2Proteomes:UP000006548RefSeq:NP_190074.1SMR:Q9FYC2STRING:3702.AT3G44880.1SUPFAM:SSF50022SUPFAM:SSF55961
SwissPalm:Q9FYC2TAIR:AT3G44880tair10-symbols:ACD1tair10-symbols:LLS1tair10-symbols:PAOUniGene:At.21728UniGene:At.36095
UniPathway:UPA00674UniProt:Q9FYC2
Coordinates (TAIR10) chr3:+:16383858..16386204
Molecular Weight (calculated) 60758.90 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.41
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVVLLSSTS ATITKSQSKK IPFLSPTTKF PLKVSISPSR SKLFHNPLRV AAPPSVPTSD STEEKRIEEE YGGDKEEEGS EFKWRDHWYP VSLVEDLDPN
101: VPTPFQLLGR DLVLWFDRND QKWAAFDDLC PHRLAPLSEG RLDENGHLQC SYHGWSFGGC GSCTRIPQAA TSGPEARAVK SPRACAIKFP TMVSQGLLFV
201: WPDENGWDRA NSIEPPRLPD DFDKPEFSTV TIQRDLFYGY DTLMENVSDP SHIDFAHHKV TGRRDRAKPL PFKVESSGPW GFQGANDDSP RITAKFVAPC
301: YSMNKIELDA KLPIVGNQKW VIWICSFNIP MAPGKTRSIV CSARNFFQFS VPGPAWWQVV PRWYEHWTSN LVYDGDMIVL QGQEKVFLAK SMESPDYDVN
401: KQYTKLTFTP TQADRFVLAF RNWLRRHGKS QPEWFGSTPS NQPLPSTVLT KRQMLDRFDQ HTQVCSSCKG AYNSFQILKK FLVGATVFWA ATAGVPSDVQ
501: IRLVLAGLSL ISAASAYALH EQEKNFVFRD YVHSEIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)