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AT3G44750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:15496452 (2005): nucleus
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone deacetylase 3
Curator
Summary (TAIR10)
Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Two lines with RNAi-directed against this gene show reduced Agrobacterium-mediated DNA transformation of the roots.
Computational
Description (TAIR10)
histone deacetylase 3 (HDA3); FUNCTIONS IN: histone deacetylase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA mediated transformation, polarity specification of adaxial/abaxial axis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: histone deacetylase 2B (TAIR:AT5G22650.1); Has 5980 Blast hits to 4690 proteins in 449 species: Archae - 12; Bacteria - 394; Metazoa - 2639; Fungi - 927; Plants - 442; Viruses - 82; Other Eukaryotes - 1484 (source: NCBI BLink).
Protein Annotations
BioGrid:8925eggNOG:ENOG410IWRPeggNOG:ENOG41120HPEMBL:AC002534EMBL:AF195545EMBL:AY065396EMBL:AY096729
EMBL:CP002686EnsemblPlants:AT3G44750EnsemblPlants:AT3G44750.1entrez:823605ExpressionAtlas:Q9FVE6GeneID:823605Genevisible:Q9FVE6
GO:GO:0005730GO:GO:0006351GO:GO:0006355GO:GO:0009294GO:GO:0009944GO:GO:0010162GO:GO:0016568
GO:GO:0016787GO:GO:0046872hmmpanther:PTHR31802hmmpanther:PTHR31802:SF5HOGENOM:HOG000029063InParanoid:Q9FVE6IntAct:Q9FVE6
InterPro:IPR007087iPTMnet:Q9FVE6OMA:SAGSHHCPaxDb:Q9FVE6Pfam:PF03066Pfam:Q9FVE6Pfscan:PS50157
PhylomeDB:Q9FVE6PRIDE:Q9FVE6PRO:PR:Q9FVE6PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q9FVE6Proteomes:UP000006548
RefSeq:NP_566872.1scanprosite:PS00028STRING:3702.AT3G44750.1TAIR:AT3G44750tair10-symbols:ATHD2Atair10-symbols:HD2Atair10-symbols:HDA3
tair10-symbols:HDT1UniGene:At.20950UniProt:Q9FVE6
Coordinates (TAIR10) chr3:+:16298045..16299585
Molecular Weight (calculated) 26373.50 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.90
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTPNIEPQ
101: GYSEEEEEEE EEVPAGNAAK AVAKPKAKPA EVKPAVDDEE DESDSDGMDE DDSDGEDSEE EEPTPKKPAS SKKRANETTP KAPVSAKKAK VAVTPQKTDE
201: KKKGGKAANQ SPKSASQVSC GSCKKTFNSG NALESHNKAK HAAAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)