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AT3G44740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.521
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class II aaRS and biotin synthetases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 3168 Blast hits to 2607 proteins in 995 species: Archae - 349; Bacteria - 1331; Metazoa - 339; Fungi - 293; Plants - 132; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0423eggNOG:KOG2298EMBL:CP002686EnsemblPlants:AT3G44740EnsemblPlants:AT3G44740.1entrez:823604GeneID:823604
GO:GO:0004820GO:GO:0005524GO:GO:0005737GO:GO:0006426Gramene:AT3G44740.1gramene_pathway:6.1.1.14gramene_pathway:TRNA-CHARGING-PWY
hmmpanther:PTHR10745hmmpanther:PTHR10745:SF6InterPro:IPR002315InterPro:IPR027031KEGG:ath:AT3G44740KO:K01880PANTHER:PTHR10745
PaxDb:F4J376PRIDE:F4J376PRINTS:PR01043ProteinModelPortal:F4J376Proteomes:UP000006548RefSeq:NP_190060.5SMR:F4J376
STRING:3702.AT3G44740.1SUPFAM:SSF55681TAIR:AT3G44740UniGene:At.50247UniProt:F4J376
Coordinates (TAIR10) chr3:-:16296410..16297687
Molecular Weight (calculated) 27803.50 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.05
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MWLILSSGVC SISLLSKSTV TSPDYLIKDC AVKSNVLSFW RQCGRTTCLR IIAPDTKNTL TRHFCEGLVL LQWEEISLCC CSNWSTFRNE ISHRQGLLRV
101: CEFTLAEIEH FVDPGNKSHP KFSDVANFEF LMFPREEQMS GQSAKKLCLG EVVAKGTVNK ETVGYFIARV YLFLVRLGTD KEQLRFRQHF ANEMARYAAD
201: CLDAEFESSY GWIECVGIAD RSAFDLRAHS VGKVALWLRE ISRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)