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AT3G44590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 2091 Blast hits to 2090 proteins in 382 species: Archae - 63; Bacteria - 0; Metazoa - 803; Fungi - 479; Plants - 427; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Protein Annotations
BioGrid:8904eggNOG:COG2058eggNOG:KOG3449EMBL:AL353818EMBL:BT004748EMBL:CP002686EnsemblPlants:AT3G44590
EnsemblPlants:AT3G44590.1EnsemblPlants:AT3G44590.2entrez:823584ExpressionAtlas:Q9LXM8GeneID:823584Genevisible:Q9LXM8GO:GO:0003735
GO:GO:0005634GO:GO:0005829GO:GO:0006414GO:GO:0022626Gramene:AT3G44590.1Gramene:AT3G44590.2HAMAP:MF_01478
hmmpanther:PTHR21141hmmpanther:PTHR21141:SF48HOGENOM:HOG000229897InParanoid:Q9LXM8IntAct:Q9LXM8InterPro:IPR027534iPTMnet:Q9LXM8
KEGG:ath:AT3G44590KO:K02943OMA:PCAENIKPaxDb:Q9LXM8Pfam:PF00428Pfam:Q9LXM8PhylomeDB:Q9LXM8
PIR:T48939PRIDE:Q9LXM8PRO:PR:Q9LXM8ProteinModelPortal:Q9LXM8Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_190045.1RefSeq:NP_974384.1SMR:Q9LXM8
STRING:3702.AT3G44590.1TAIR:AT3G44590UniGene:At.21080UniProt:Q0WRF9UniProt:Q9LXM8
Coordinates (TAIR10) chr3:+:16163983..16164658
Molecular Weight (calculated) 11015.90 Da
IEP (calculated) 4.13
GRAVY (calculated) -0.04
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVAAAFLLA VLGGNANPSA DNIKDIIGAV GADVDGESIE LLLKEVSGKD IAELIASGRE KLASVPSGGG VAVSAAPSSG GGGAAAPAEK KEAKKEEKEE
101: SDDDMGFSLF E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)