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AT3G44380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.787
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Water stress and hypersensitive response domain (InterPro:IPR013990), Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G01080.1); Has 168 Blast hits to 167 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWQQeggNOG:ENOG4111USDEMBL:AL138641EMBL:CP002686EnsemblPlants:AT3G44380EnsemblPlants:AT3G44380.1entrez:823563
GeneID:823563GO:GO:0009269Gramene:AT3G44380.1hmmpanther:PTHR31852hmmpanther:PTHR31852:SF7HOGENOM:HOG000006316InterPro:IPR004864
InterPro:IPR013990KEGG:ath:AT3G44380OMA:PKDPTFHPfam:PF03168PhylomeDB:Q9M287PIR:T47428Proteomes:UP000006548
RefSeq:NP_190024.1SMART:SM00769STRING:3702.AT3G44380.1SUPFAM:0051044TAIR:AT3G44380UniGene:At.1345UniProt:Q9M287
Coordinates (TAIR10) chr3:-:16036254..16036814
Molecular Weight (calculated) 20406.70 Da
IEP (calculated) 7.16
GRAVY (calculated) 0.07
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSRDQKVKW SWSSALIGAA SATAAASLLS AKPKDPTFHL ISIDLTSLKL NLPVLDAELM LTVHVTNPNI AAIHYSSTKM TILYDGTVLG SAEVKAGSQP
101: ARSCQLLRLP ARLDGMELAQ HARQFFSDVA NREMKLEAKL TIEGAAKVLW WDHSFRVHVD SFVTVDPVFL DVIGQENKSQ MDLFLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)