AT3G43990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Bromo-adjacent homology (BAH) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G23120.1); Has 502 Blast hits to 500 proteins in 75 species: Archae - 0; Bacteria - 5; Metazoa - 102; Fungi - 0; Plants - 380; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:15782538..15785178 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44421.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 380 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIQQSNEVV VIDNVPLSTL STKETTTKKR RVEESKEMQV KKKAKFEQRP SDCAKSIGKP IKFTGKGQNK KCHYETFEFH GKQYRLKDFV LLYPEDNKQK 101: EYIAIIKDIY SQEKDGLVKM EVQWFYRRED IEEKHFGKWK TENPREIFFS FHCDEVFAES VKYKCLVYFV PDDKQIPNRI HHSGFIVQMV YDNVRKKVRK 201: FSHEGFEEEQ KFEIDMLVAK TVSRIGNLVD VEKVQTTTIP RRKRIVRKCE RMSSNPISEK LESLPSSALD RDKTLLELLE VVLKNMCCES TGTSRKDVVQ 301: MVLALEEALY DSFADDVPKY NYKLELLVER LKNSRVLATR LLNGELKPEQ AIKMADFEEP KLVEDVASTS ENVGHKDCLD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)