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AT3G43930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.967
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BRCT domain-containing DNA repair protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BRCT domain-containing DNA repair protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26270.1); Has 308 Blast hits to 303 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 87; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IICHeggNOG:ENOG41107AVEMBL:AY648335EMBL:CP002686EnsemblPlants:AT3G43930EnsemblPlants:AT3G43930.1entrez:823509
ExpressionAtlas:Q6DSR3Gene3D:3.40.50.10190GeneID:823509Gramene:AT3G43930.1hmmpanther:PTHR13561hmmpanther:PTHR13561:SF29HOGENOM:HOG000029538
InterPro:IPR001357OMA:GEIDETHPfam:PF12738Pfscan:PS50172PhylomeDB:Q6DSR3PROSITE:PS50172Proteomes:UP000006548
RefSeq:NP_189979.3SMART:SM00292SMR:Q6DSR3SUPFAM:SSF52113TAIR:AT3G43930UniGene:At.50849UniProt:Q6DSR3
Coordinates (TAIR10) chr3:-:15760948..15763263
Molecular Weight (calculated) 56411.30 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.40
Length 502 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGVRRAEVI DTKRCSKLRV DFTPSLRGSR ISEPFSPATT TTTTSRFHPP VRSDGPFSGL IICVTGLSKE ARKQVKEATE RLGGEYSALL HSLCTHLVVQ
101: NYDGRKFEHA LKHGRRETLY IVTLGWFVDS VCRNVKLSES FYAVKNPEET KVNEDGLKSV YAVEKLHRGG GVQGIEVTGS KDLALSGYSV FIDADISEEV
201: RRQVSQVAVE GGAKLMTQWF IGCNASHVVC EGGSVLRYLG HSSNLVTPLW LQKTLEEKPT QNLVQMSDDL ARDLRTMIEN LGKESPTDRT RPHKERQKIV
301: ESAKKTVTNR HAKMGKTLIQ PLNLSSLLDS ISWTISEPTS TASVIIDSFS NNDDIERKSL SAFFDAKSND SFTHSMRLLT ESERMELVYK NHFITLLLPI
401: DWYGEMGPSS RSYFSETGFT CQQILQNIYA FYQENMSEEE LKAAIHTNSR HSEKLRAADS VMKGGKTVFK RIQFLGSEKG FEMLKRVSSF NCSNVYELII
501: KA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)