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AT3G43860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase 9A4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase 9A4 (GH9A4); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B13 (TAIR:AT4G02290.1); Has 1796 Blast hits to 1785 proteins in 262 species: Archae - 2; Bacteria - 633; Metazoa - 188; Fungi - 19; Plants - 915; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G43860-MONOMERCAZy:GH9EC:3.2.1.4eggNOG:ENOG410IHSNeggNOG:ENOG410ZZU6EMBL:AL162691EMBL:AY072099
EMBL:CP002686EnsemblPlants:AT3G43860EnsemblPlants:AT3G43860.1entrez:823499Gene3D:1.50.10.10GeneID:823499Genevisible:Q8VYG3
GO:GO:0005576GO:GO:0008810GO:GO:0030245GO:GO:0071555Gramene:AT3G43860.1gramene_pathway:3.2.1.4gramene_pathway:PWY-1001
hmmpanther:PTHR22298hmmpanther:PTHR22298:SF31HOGENOM:HOG000021033InParanoid:Q8VYG3InterPro:IPR001701InterPro:IPR008928InterPro:IPR012341
iPTMnet:Q8VYG3KEGG:00500+3.2.1.4KEGG:ath:AT3G43860KO:K01179OMA:FDSTHLMPaxDb:Q8VYG3Pfam:PF00759
Pfam:Q8VYG3PhylomeDB:Q8VYG3PIR:T47422PRIDE:Q8VYG3PRO:PR:Q8VYG3ProteinModelPortal:Q8VYG3Proteomes:UP000006548
RefSeq:NP_189972.2SMR:Q8VYG3STRING:3702.AT3G43860.1SUPFAM:SSF48208TAIR:AT3G43860tair10-symbols:AtGH9A4tair10-symbols:GH9A4
TMHMM:TMhelixUniGene:At.42700UniProt:Q8VYG3
Coordinates (TAIR10) chr3:+:15707183..15709438
Molecular Weight (calculated) 54122.60 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.26
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MANYKGRGNV MIRSMLLGLY GIINIVCVNG TFINYKDALT KSLIFLEAQR SGKLPPNNRV PWRGDSALDD GKLVNVDLSG GYYDAGDNVK YGLPMAFTIT
101: TLAWSTITYE KELRATGELE NARAAIRWGT DYFLKCASRK NRLYVQVGDP NADHQCWARP ENMKTPRTVL EISDKVPGTE IAAEAAAAFA ASSIVFRHVD
201: HKYARRLLNK AKLLFKLAKS HKGTYDGECP FYCSNSGYND ELIWAATWLY KATRNHLYLS YLKFEAISAY VAEFSWDLKY AGAQILITKL IFEGHKGLDL
301: YKQQADSFVC SNLPGSPYHQ VFTTPGGMIH LRDGANSQYV TATAFLFSAY ADILQKHNQK ISCGSHQFDS THLMAFAKKQ IDYILGHNPQ GRSYMVGFGP
401: NPPKQAHHRG ASVPMHEANA PLSCPLSFVK WYNKNVPNAN ELTGAILGGP DRQDKFQDLR WTSVYTEPCT YINSIAVGVL AKLAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)