AT3G43840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
3-oxo-5-alpha-steroid 4-dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system, integral to membrane, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104); BEST Arabidopsis thaliana protein match is: 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (TAIR:AT2G16530.2); Has 145 Blast hits to 145 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 68; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:15700352..15700855 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 9676.96 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.42 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||||||
| Length | 84 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MSVLMMMVMA VVSETNCVVK FVTLPNFLSA FKYEVKKSAN LPIWLLFGFV AANLTYAAGE THRWYLAKFE NYPANRHAIF PYVY | ||||||||||||||||||||||||||||
| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)