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AT3G43720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.883
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G27130.1); Has 691 Blast hits to 687 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3MXeggNOG:ENOG410YY93EMBL:AB246324EMBL:AK318819EMBL:AL162691EMBL:AY045908EMBL:AY079420
EMBL:AY088620EMBL:CP002686EnsemblPlants:AT3G43720EnsemblPlants:AT3G43720.1EnsemblPlants:AT3G43720.2entrez:823481ExpressionAtlas:Q9LZH5
GeneID:823481Genevisible:Q9LZH5GO:GO:0005886GO:GO:0006869GO:GO:0008289GO:GO:0031225GO:GO:0042335
GO:GO:0046658hmmpanther:PTHR33044hmmpanther:PTHR33044:SF24HOGENOM:HOG000130016InParanoid:Q9LZH5InterPro:IPR016140KEGG:ath:AT3G43720
OMA:NICKLETPaxDb:Q9LZH5Pfam:PF14368Pfam:Q9LZH5PhylomeDB:Q9LZH5PIR:T47408PRIDE:Q9LZH5
PRO:PR:Q9LZH5ProteinModelPortal:Q9LZH5Proteomes:UP000006548RefSeq:NP_001030803.1RefSeq:NP_189958.1SMART:SM00499SMR:Q9LZH5
STRING:3702.AT3G43720.1SUPFAM:SSF47699TAIR:AT3G43720TMHMM:TMhelixUniGene:At.4842UniProt:Q9LZH5
Coordinates (TAIR10) chr3:-:15615549..15617099
Molecular Weight (calculated) 19176.40 Da
IEP (calculated) 4.30
GRAVY (calculated) 0.54
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNVVVIAVV LIVASLTGHV SAQMDMSPSS GPSGAPDCMA NLMNMTGCLS YVTVGEGGGA AKPDKTCCPA LAGLVESSPQ CLCYLLSGDM AAQLGIKIDK
101: AKALKLPGVC GVITPDPSLC SLFGIPVGAP VAMGDEGASP AYAPGSMSGA ESPGGFGSGP SASRGSDAPS SAPYSLFLNL IIFPLAFAFY IFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)