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AT3G43610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.376
cytosol 0.359
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Spc97 / Spc98 family of spindle pole body (SBP) component
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: chloroplast, spindle pole, microtubule organizing center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ5BeggNOG:KOG2000EMBL:CP002686EnsemblPlants:AT3G43610EnsemblPlants:AT3G43610.1entrez:823458GeneID:823458
GO:GO:0000226GO:GO:0000922GO:GO:0005815GO:GO:0090063Gramene:AT3G43610.1hmmpanther:PTHR19302hmmpanther:PTHR19302:SF37
InParanoid:F4IZ65InterPro:IPR007259KEGG:ath:AT3G43610KO:K16573OMA:FFLNIEIPANTHER:PTHR19302PaxDb:F4IZ65
Pfam:PF04130PRIDE:F4IZ65ProteinModelPortal:F4IZ65Proteomes:UP000006548RefSeq:NP_189947.2SMR:F4IZ65STRING:3702.AT3G43610.1
TAIR:AT3G43610UniGene:At.36253UniProt:F4IZ65
Coordinates (TAIR10) chr3:-:15517772..15523927
Molecular Weight (calculated) 137272.00 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.34
Length 1207 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPVLATSLVS LKVEEPYLPP RNWESLPSQS GRFLPPTRSS ASSSSSSSFV SESSLVRLAL NALQGVESSL ISIEQLSSAF CSEPADRTFH KIPSLWHRLS
0101: STDALGQILR DIGCFGSLVF LLHKFVDHFT RLNLDVESAV EGQGSCKIGE NEEVNNKSCY TLVNQAFAIA VRRVLEGYIS GLDTLCASIE LRRSSNIVDG
0201: SDHGSSRLGS LTNVVHPKIT LLEVFLHTRE LRTQIEALAN ICDLYDIALS YCASPWECLI TEATTRFHGF YRGSDLLTYL YSQLQVADPT HSAMLKFLFL
0301: KTCEPYCEFI RSWMFKAELN DPHKEFIVEC RSESTSFSWN KPGISPLKSV RERGGLVPCF LNGFLEPIVR AGQQLQVITK LLELCNLPAS GHKNYTDLLP
0401: CWTYFSTTSP GYPSPITFSK LHIEVMIKKR DDYYRMMQEK LGDFSEKFEV FPGQVPGAIS LPISYGDGDK NSIYFTLDES LLIPSTMAID LTRDQSGSDS
0501: DDQNTEDRWF SEIDASCSSE CSSTRDSLEA SEVGLLDSQS TLVGPPPNYL SALRFSVASN GNCNQNLVQH SDSGYIDNNL VRQGEKADIN HQWVDTKPEE
0601: STGVCEDDKF RGPLLIKSWP LGGLPRNPFC VDKKSADDDS EDPRNYSGAR MEQRHLMNTD ERKLFLNNIS TSGSCSKHER RHDVLENCLS SKLDLMKDTK
0701: VNYPNDVLSM NPLVRCDFLR KHGNTNKRNQ GKSLPWFDFS AVDDPSKTCI TRIPVRVPID FQKESHSPQT DRKSHRHANQ ERFDVEDPKV SSSQLSSGIK
0801: GCAEEKKSNA FGGGRWESML RRSNNPETSA FSDRRQDSSG TFELPLDFVI DKCLLQEIHL QYNFVSKLAI KLLEEGFGLQ EHLLALRRYH FMELADWADV
0901: FVVSLWHHKW LVTEADKRIA EIQGFLESSI QRSSCERDIC KDRIFLYKRQ GTMHIPPSTI GVRSFDFLRL GYRVDWPISI ILTCDALTAY ADVFSFLVQV
1001: KLAAYVLTDV WCSLKDVRHM MHEKKEKILK QELRWLNILM KLRHQVNHFV TALQQYVHSE LSHVSWSKFL HSLKNKVKDM MDLESVHMAY LSEALRICFL
1101: SDETQIISNI IENILQCALD FRSCLPRGIQ STDRVPNDSW TKTLGINTSQ VMMVKQNFDK ELKELHKCHL RSPKHGKYGL SRFWDYLNFN LYYSDILHDS
1201: NIFSLIP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)