AT3G43250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF572) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF572) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1346 Blast hits to 1149 proteins in 221 species: Archae - 2; Bacteria - 13; Metazoa - 444; Fungi - 243; Plants - 125; Viruses - 0; Other Eukaryotes - 519 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:15216713..15217462 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29358.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.67 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.16 | ||||||||||||||||||||||||||||
| Length | 249 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGERKNLNKY YPPDFDPKKI HRIKKPKNQQ KKIRFMLPVR VRCNTCGNYM SEGTKFNCRQ EDVITETYLG LKIHRFYIKC TKCLAELTIK TDPKNHSYTV 101: ESGASCLYNG HEDIEEEKKK KHENALESLE NRTVVSKREI EVMASLDELK SMKSRRASLS VDYMLEDLSR RKKQEEENVE EELLIKSIKF GKRIRTDEEK 201: KKNYEAFDEK KKKKKKPKKR DSGTVCIISK KKTGLESLYH NCDNDSDDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)