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AT3G43240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARID/BRIGHT DNA-binding domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); Has 133 Blast hits to 125 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 9; Plants - 99; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:8721eggNOG:ENOG410IFCHeggNOG:ENOG410XRC1EMBL:AL353871EMBL:BT010580EMBL:CP002686EnsemblPlants:AT3G43240
EnsemblPlants:AT3G43240.1entrez:823399Gene3D:1.10.150.60Gene3D:3.30.40.10GeneID:823399Genevisible:Q6NQ79GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008270Gramene:AT3G43240.1hmmpanther:PTHR22970hmmpanther:PTHR22970:SF21
HOGENOM:HOG000005827InParanoid:Q6NQ79IntAct:Q6NQ79InterPro:IPR001606InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083
KEGG:ath:AT3G43240OMA:GSCGEWAPaxDb:Q6NQ79Pfam:PF01388Pfam:Q6NQ79Pfscan:PS51011PhylomeDB:Q6NQ79
PIR:T49238PRIDE:Q6NQ79PRO:PR:Q6NQ79PROSITE:PS51011ProteinModelPortal:Q6NQ79Proteomes:UP000006548RefSeq:NP_189910.2
SMART:SM00249SMART:SM00501SMR:Q6NQ79STRING:3702.AT3G43240.1SUPFAM:SSF46774SUPFAM:SSF57903TAIR:AT3G43240
UniGene:At.36303UniProt:Q6NQ79
Coordinates (TAIR10) chr3:-:15210032..15214440
Molecular Weight (calculated) 82572.00 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.31
Length 747 amino acids
Sequence (TAIR10)
(BLAST)
001: MFHGQGFSRN RCNVVAVVSG AELCDTNNQI DGTSHQPKYP FPDLSSSGRL KFQVLNNPTP EEFQVAVNSS ATDFVYLQGE HSGDSDEVGP LVLGYTDFST
101: PDALVTLFGS TLPTTVYLEL PNGEELAQAL YSKGVQYVIY WKNVFSKYAA CHFRHSLFSV IQSSCSDTWD VFHVAEASFR LYCTSDNAVL PSNSNRKMNY
201: EMGPCLLGEP PKIDVVSPEA DELEEENSLE SLPSIKIYDE DVTVRFLLCG PPCTVDTFLL GSLMDGLNAL LRIEMRGSKL HNRSSAPAPP LQAGTFTRGV
301: VTMRCDVSTC SSAHISMLVS GNAQTCFSDQ LLENHIKHEV VEKIQLVHSV VNSEETKRGF SEPRRSASIA CGASVCEVSM QVPTWALQVL RQLAPDVSYR
401: SLVVLGVASI QGLSVASFEK DDAERLLFFC GQQINDTSNH DALLSKIPNW LTPPLPTRKR SEPCRESKEI ENGGPTSRKI NVAALRPIPH TRRHKMIPFS
501: GYSEIGRFDG DHTKGSLPMP PKHGASGGTP VTHRKAFSGS YQRKQIISLN PLPLKKHDCG RAHIQVCSEE EFLRDVMQFL LIRGHTRLVP PGGLAEFPDA
601: VLNSKRLDLF NLYREVVSRG GFHVGNGINW KGQVFSKMRN HTLTNRMTGV GNTLKRHYET YLLEYEYAHD DVDGECCLIC RSSTAGDWVN CGSCGEWAHF
701: GCDRRPGLGA FKDYAKTDGL EYVCPNCSVS NYRKKSQKTS NGGLLVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)