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AT3G43230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/FYVE/PHD-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Ysc84 actin-binding domain (InterPro:IPR007461); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT1G29800.1); Has 4080 Blast hits to 3974 proteins in 331 species: Archae - 0; Bacteria - 230; Metazoa - 2175; Fungi - 711; Plants - 392; Viruses - 3; Other Eukaryotes - 569 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2930eggNOG:KOG1843EMBL:AL353871EMBL:AY070053EMBL:AY096434EMBL:CP002686EnsemblPlants:AT3G43230
EnsemblPlants:AT3G43230.1entrez:823398Gene3D:3.30.40.10GeneID:823398GO:GO:0046872Gramene:AT3G43230.1hmmpanther:PTHR15629
hmmpanther:PTHR15629:SF2IntAct:Q9LXL1InterPro:IPR000306InterPro:IPR007461InterPro:IPR011011InterPro:IPR013083InterPro:IPR017455
KEGG:ath:AT3G43230OMA:PEKSIPHPfam:PF01363Pfam:PF04366Pfscan:PS50178PhylomeDB:Q9LXL1PIR:T49237
PROSITE:PS50178Proteomes:UP000006548RefSeq:NP_189909.1SMART:SM00064SMR:Q9LXL1STRING:3702.AT3G43230.1SUPFAM:SSF57903
TAIR:AT3G43230UniGene:At.27508UniProt:Q9LXL1
Coordinates (TAIR10) chr3:+:15207776..15209599
Molecular Weight (calculated) 52437.10 Da
IEP (calculated) 5.51
GRAVY (calculated) -0.25
Length 485 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)