suba logo
AT3G42960.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.882
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TAPETUM 1
Curator
Summary (TAIR10)
Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells.
Computational
Description (TAIR10)
TAPETUM 1 (ATA1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: flower development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 115619 Blast hits to 115418 proteins in 3535 species: Archae - 928; Bacteria - 77402; Metazoa - 4592; Fungi - 5922; Plants - 2472; Viruses - 7; Other Eukaryotes - 24296 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G42960-MONOMEREC:1.1.1.-eggNOG:COG1028eggNOG:KOG0725EMBL:AL138654EMBL:AY086103EMBL:BT029345
EMBL:CP002686EMBL:U76501EnsemblPlants:AT3G42960EnsemblPlants:AT3G42960.1entrez:823352Gene3D:3.40.50.720GeneID:823352
Genevisible:Q9M1K9GO:GO:0016491Gramene:AT3G42960.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF510InParanoid:Q9M1K9InterPro:IPR002347
InterPro:IPR016040KEGG:ath:AT3G42960OMA:VRKIFDVPANTHER:PTHR24322PaxDb:Q9M1K9Pfam:PF00106Pfam:Q9M1K9
PhylomeDB:Q9M1K9PIR:T47354PRIDE:Q9M1K9PRINTS:PR00080PRINTS:PR00081PRO:PR:Q9M1K9ProteinModelPortal:Q9M1K9
Proteomes:UP000006548Reactome:R-ATH-2142700Reactome:R-ATH-70895RefSeq:NP_189882.1SMR:Q9M1K9STRING:3702.AT3G42960.1SUPFAM:SSF51735
TAIR:AT3G42960tair10-symbols:ASDtair10-symbols:ATA1tair10-symbols:TA1UniGene:At.1333UniProt:Q9M1K9
Coordinates (TAIR10) chr3:-:15018735..15019656
Molecular Weight (calculated) 28348.20 Da
IEP (calculated) 6.95
GRAVY (calculated) 0.17
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSDKRLFE KVAIITGGAR GIGAATARLF TENGAYVIVA DILENEGILV AESIGGCYVH CDVSKEADVE AAVELAMRRK GRLDVMFNNA GMSLNEGSIM
101: GMDVDMVNKL VSVNVNGVLH GIKHAAKAMI KGGRGGSIIC TSSSSGLMGG LGGHAYTLSK GAINGVVRTT ACELGSHGIR VNSISPHGVP TDILVNAYRK
201: FLNHDKLNVA EVTDIIAEKG SLLTGRAGTV EDVAQAALFL ASQESSGFIT GHNLVVDGGY TSATSTMRFI YN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)