AT3G42860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 49068 Blast hits to 18471 proteins in 427 species: Archae - 0; Bacteria - 1; Metazoa - 1577; Fungi - 900; Plants - 1276; Viruses - 44658; Other Eukaryotes - 656 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:14946458..14948097 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39914.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKITIPVES LDEEDDFLLQ LAAIEAEAAA KRPRVSSIPE GPYMAALKGS KSDQWQQSPL NPASKSRSVA VTTGGFQRSD GGGGVAGEQD FPEKSCPCGV 101: GICLILTSNT PKNPGRKFYK CPNREENGGC GFFQWCDAVQ SSGTSTTTSN SYGNGNDTKF PDHQCPCGAG LCRVLTAKTG ENVGRQFYRC PVFEGSCGFF 201: KWCNDNVVSS PTSYSVTKNS NFGDSDTRGY QNAKTGTPCY KCGKEGHWAR DCTVQSDTGP VKSTSAAGDC FKCGKPGHWS RDCTAQSGNP KYEPGQMKSS 301: SSSGECYKCG KQGHWSRDCT GQSSNQQFQS GQAKSTSSTG DCYKCGKAGH WSRDCTSPAQ TTNTPGKRQR QY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)