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AT3G42790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alfin-like 3
Curator
Summary (TAIR10)
AL3 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational
Description (TAIR10)
alfin-like 3 (AL3); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 5 (TAIR:AT5G20510.1); Has 1689 Blast hits to 1654 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 785; Fungi - 353; Plants - 465; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Protein Annotations
BioGrid:8641eggNOG:ENOG410YG6PeggNOG:KOG1632EMBL:AL138639EMBL:AY062851EMBL:AY114574EMBL:CP002686
EnsemblPlants:AT3G42790EnsemblPlants:AT3G42790.1entrez:823316Gene3D:3.30.40.10GeneID:823316Genevisible:Q9M2B4GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0016568Gramene:AT3G42790.1hmmpanther:PTHR12321hmmpanther:PTHR12321:SF43
HOGENOM:HOG000238550InParanoid:Q9M2B4InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787
InterPro:IPR021998KEGG:ath:AT3G42790OMA:GMAKAKDPaxDb:Q9M2B4Pfam:PF00628Pfam:PF12165Pfam:Q9M2B4
Pfscan:PS50016PhylomeDB:Q9M2B4PIR:T47337PRIDE:Q9M2B4PRO:PR:Q9M2B4PROSITE:PS01359PROSITE:PS50016
ProteinModelPortal:Q9M2B4Proteomes:UP000006548RefSeq:NP_189865.1scanprosite:PS01359SMART:SM00249SMR:Q9M2B4STRING:3702.AT3G42790.1
SUPFAM:SSF57903TAIR:AT3G42790tair10-symbols:AL3UniGene:At.27212UniProt:Q9M2B4
Coordinates (TAIR10) chr3:-:14878128..14879618
Molecular Weight (calculated) 28215.90 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.73
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD
101: AWLLSVSFYF GSRFSFHKEE RKRLFNMIND VPTIFEVVTG MAKAKDKSSA ANQNGNKSKS NSKVRTSEGK SSKTKQPKEE DEEIDEDDED DHGETLCGAC
201: GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)