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AT3G42770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.458
golgi 0.258
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G44060.1); Has 1936 Blast hits to 1850 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1932; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JMIDeggNOG:ENOG410Z7P5EMBL:AL138663EMBL:CP002686EnsemblPlants:AT3G42770EnsemblPlants:AT3G42770.1entrez:823312
Gene3D:3.80.10.10GeneID:823312Genevisible:Q9M190Gramene:AT3G42770.1hmmpanther:PTHR32141hmmpanther:PTHR32141:SF18HOGENOM:HOG000015201
InParanoid:Q9M190InterPro:IPR001810InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675iPTMnet:Q9M190KEGG:ath:AT3G42770
OMA:TIVFHERPaxDb:Q9M190Pfam:PF07723Pfam:PF12937Pfam:Q9M190Pfscan:PS50181PhylomeDB:Q9M190
PIR:T47335PRIDE:Q9M190PRO:PR:Q9M190PROSITE:PS50181ProteinModelPortal:Q9M190Proteomes:UP000006548RefSeq:NP_189863.1
SMART:SM00256SMART:SM00579SMR:Q9M190SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G42770UniGene:At.53673
UniProt:Q9M190
Coordinates (TAIR10) chr3:+:14867122..14870083
Molecular Weight (calculated) 60934.10 Da
IEP (calculated) 8.94
GRAVY (calculated) 0.08
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCLPDELLV QILSFLPTKE ATSTSLLSKR WRTLFTLSPN LDFDNSLLLQ SKKRKWNMRN IQKSFVGFVD STLALQGGKG IKSFSLKFKE TLGDVNGEVD
101: VNRWICNALE HGVSELHLRI DYTKRCHLPS EIFTSTKLVK LSLVTQSCFP VVPNCISLPS LKVLFLDSIW FEVPQFLIFL TACPALEDLT IYQKPHSVGM
201: PYHISSKTIK RLSVTYTCGY FVDYGLKLFN TPSVVDLYYS DYVRHKYPHM NLDSLPKATL DIHFLDDNAA NVTELLSGIR NVKTLHLTSS TVKVILLCCK
301: GEIPMFENLI NLKFSGKTRQ WKFLLPLLLE ICPNLTTLVL SGLDQNWFVG FRTPPNNQVK MLSIMQYQGS ERELKLISYF VLKMECLQVV KVYVSSPMND
401: LKKMQLTEDL LKLPKASPKL NIQVLVPSDT YLPALKVLFL DSVWFDFHQF ANVFFPACPA LEDFAIHIKS FRRKARSENE LEHISHFSLK MEFLEVLKVY
501: VALTMDDTKK VELTKELLKL PISSSKLIIQ VM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)