AT3G42660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:14751280..14755701 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104859.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.28 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 953 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSRSLKLRE AHKVGGSAAF CSILWDHKAE HFVTSSSSDP SISVHDGLST STLPPTILRH HQDGVTSLAL SNDSTLLASG SIDHCVKLYK FPSGEFQTNI 101: TRFTLPIRVL AFNGSGSLLA AAGDDEGIKL INTFDGSIVR VLKGHKGPVT GLDFHPNGEL LASIDTTGTV LCWELQNGVV SFTLKGVAPD TGFNTSIVNI 201: PRWSPDGRTL AVPGLRNDVV MYDRFTGEKL FALRGDHLEA ICYLTWAPNG KYIATSGLDK QVLLWDVDKK QDIDRHKFEE RICCMSWKPN GNALSVIDAK 301: GRYGVWESLV PSSMLSPTVG VPDIVPKKRN EILDFDDEVE EEIYRASESL DDAMGDSDDG ESHHTSRKRL RKKTLIDEDV DDAYEELNDG SSLPSASEYR 401: KKSHRGHREK QGARSGAFKG ISASTKYKMQ SSFQPGATPP EPGKRTFLCY NMLGCITTIE HEGNSRIETD FHDTGRGPRV SSMIDIYGFT MASINETGCV 501: FANPCKGEKN MSVLMYRPFR SWASNSEWTM RFEGEEVKVV ANGSGWVAAV TSLNLLRVFS EGGLQKHILS LDGPVVTAVG CKDHLAVVTH VSDCLPSNEQ 601: VMEFRVFNIS KMTQELKGRV ALTPGSRLTW IGFSEEGSLS SYDSEGVLRV FTSQYGGSWI PVFSTSKEKK QEENYWVVGL NTSSLYCIAC KYAEMFPQVT 701: PKPILTILDL SLPLASSDLG AASLENELIL KQLRLYETQR KVDDMALVGV DTTALEDEAF DLEVSQDKCI LRLISSCCSS DSFARASELM ELLTLEKSMR 801: AAITLVTKLK LPFLAEKFSS ILEERLLEEA SEAAVTNPAL NPNGEVVTRV ESKVQNPPAS IQTSENTEAV MKSSATKLSA PTLLKKSKVS EGLKLGKEQT 901: KKDKSDDAKI KEIKKLNLKN PVNNVNKEDK GQEKEVNQGE ARRSSNPFLK STV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)