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AT3G42660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.956
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSJVeggNOG:KOG1274EMBL:CP002686EnsemblPlants:AT3G42660EnsemblPlants:AT3G42660.1entrez:823286Gene3D:2.130.10.10
GeneID:823286Gramene:AT3G42660.1hmmpanther:PTHR19932hmmpanther:PTHR19932:SF10InParanoid:F4JF14InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR022100InterPro:IPR024977iPTMnet:F4JF14KEGG:ath:AT3G42660KO:K11274
ncoils:CoilOMA:EWTYELPPaxDb:F4JF14Pfam:PF00400Pfam:PF12341Pfam:PF12894Pfscan:PS50082
Pfscan:PS50294PRIDE:F4JF14PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:F4JF14Proteomes:UP000006548
RefSeq:NP_189852.2scanprosite:PS00678SMART:SM00320SMR:F4JF14STRING:3702.AT3G42660.1SUPFAM:SSF50978TAIR:AT3G42660
UniGene:At.66552UniProt:F4JF14
Coordinates (TAIR10) chr3:+:14751280..14755701
Molecular Weight (calculated) 104859.00 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.34
Length 953 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSRSLKLRE AHKVGGSAAF CSILWDHKAE HFVTSSSSDP SISVHDGLST STLPPTILRH HQDGVTSLAL SNDSTLLASG SIDHCVKLYK FPSGEFQTNI
101: TRFTLPIRVL AFNGSGSLLA AAGDDEGIKL INTFDGSIVR VLKGHKGPVT GLDFHPNGEL LASIDTTGTV LCWELQNGVV SFTLKGVAPD TGFNTSIVNI
201: PRWSPDGRTL AVPGLRNDVV MYDRFTGEKL FALRGDHLEA ICYLTWAPNG KYIATSGLDK QVLLWDVDKK QDIDRHKFEE RICCMSWKPN GNALSVIDAK
301: GRYGVWESLV PSSMLSPTVG VPDIVPKKRN EILDFDDEVE EEIYRASESL DDAMGDSDDG ESHHTSRKRL RKKTLIDEDV DDAYEELNDG SSLPSASEYR
401: KKSHRGHREK QGARSGAFKG ISASTKYKMQ SSFQPGATPP EPGKRTFLCY NMLGCITTIE HEGNSRIETD FHDTGRGPRV SSMIDIYGFT MASINETGCV
501: FANPCKGEKN MSVLMYRPFR SWASNSEWTM RFEGEEVKVV ANGSGWVAAV TSLNLLRVFS EGGLQKHILS LDGPVVTAVG CKDHLAVVTH VSDCLPSNEQ
601: VMEFRVFNIS KMTQELKGRV ALTPGSRLTW IGFSEEGSLS SYDSEGVLRV FTSQYGGSWI PVFSTSKEKK QEENYWVVGL NTSSLYCIAC KYAEMFPQVT
701: PKPILTILDL SLPLASSDLG AASLENELIL KQLRLYETQR KVDDMALVGV DTTALEDEAF DLEVSQDKCI LRLISSCCSS DSFARASELM ELLTLEKSMR
801: AAITLVTKLK LPFLAEKFSS ILEERLLEEA SEAAVTNPAL NPNGEVVTRV ESKVQNPPAS IQTSENTEAV MKSSATKLSA PTLLKKSKVS EGLKLGKEQT
901: KKDKSDDAKI KEIKKLNLKN PVNNVNKEDK GQEKEVNQGE ARRSSNPFLK STV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)