AT3G42140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.881 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;nucleic acid binding | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, petal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 184 Blast hits to 184 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 11; Plants - 147; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:14302060..14303018 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31431.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||
| Length | 273 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADNLQRQMQ EIALGVQEEA INLLIELCDE ALRKPNLASL QNRCPKNVDE EVVGRILEIH KIEFLFQSEE SMFSILRRGP WSFNDWMCVI QRWTKLHSDA 101: EFKRIPFWIQ IRGIPLRFLT ARIITSIGER MGLFLETNLG RDVSVLKFQY EKLKNFCTTC GMLSHDASEC PTSGNQGPHA DDDDDDDDND ANEDHPDVPG 201: DNPDQVHGPM NQQHPEESTE DEHQNAPKRG KLKPLLQRLT MEVPWCVATC ARPMPQKILN TAWLKDREGN HKF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)