AT3G33530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.845 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1); Has 166 Blast hits to 141 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:14085354..14093449 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 146906.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.27 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||
| Length | 1345 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAASKPSPTD TWDSTLPGPP SRNNFGSADL SPSGLFAFAS GSSVSVVDSR SLQLVSTIPL PPPPGALSPF VTSVRWIPLP LPRDLLSTEP SASHLLLAVA 0101: DRHGRVALVD FHLRSVVVWL NPSSDPKLGI QDLCWVQARH DSHVLAAISG SSFLSLYTTS GGLFWKYDAG TEILSCLRRD PYDSRHFCVL GLKGFLLSVK 0201: VLGDSENDVV IQEMQIKTDF SELPRLEREA ASNGNSSSSS PASAAFPLYF ARFAFSPHWK NILFVTFPRE LLVFDLQYET PLSTTPLPRG CAKFLDILPD 0301: PNKELLYCGH VDGRLSIWRR KEGEQVHVMC TMEEFMPSIG MSIPSPSALA VLLSHSDSTM QTITKIHPDG TSSIDFDNPF DFYDESLLVS KTTFISLSDD 0401: GKIWKWVLSA EGVEDALKNA SDLDMGIGAT EAALPGAIQE NDSSSLDDEL VVAPTNRSRG HTSGSSMEKS DLSFKVGGWK VFGAYTCLLR SMQISLTGQL 0501: QLLSSTVSTL AVPSPSLTAT LARGGNIPAA AVPLVALGTQ SGTIDVVDVS TNAVAASTSV HTGVVRGLRW LGNSRLVSFS YSQVNDKSRG YINRLVVTCL 0601: RSGLNKPFRD LQKPERTPIR ALRTSSSGRY LLILFRDAPV EVWAMTKHPV MLRSLALPFT VVEWTLPAVP RPGQGGPSKQ SLSASEGVTA SGDSWAVIDI 0701: FSASVGSDGS QEETVESFAF ALVNGALGVF EVQGRRIRDF RPKWPSTSFV PSDGLVTAMA YRLPHVVMGD RSGNIRWWDV TTGQSSAFNS HRDGIRRIKF 0801: SPVVAGDRSR GRVAVLFNDN TFSVFDLDSP DPLAQSLLQP QIPGTLVLEL DWLPLRTDKN DPLVLCIAGA DSTFRLVEVT VNEKKAGFVP QSKSVKERFR 0901: PMPMYSPILL PVPHALALRM ILQLGVKPSW FNTSSTTLEK RPHLIRGMAS SSKDLRSYMI QLPPLGDPVV PEMLLKILEP YRKEGCLLDD ERAKLYADVV 1001: KKGYAARFAF AASVFGETSE ALFWLQLPQA IRHLMNKLTR RSPQKISSPT LDSGADEVAM PSKIPSTGLS SPEARKIDSM CDGSLRLMAF EREELRTRAN 1101: ERLPWHEKLD GEDCIQKQVH ELISVGNLEA AVSLLLSSAP DSPYFYPNAL RAVALASAVS KSLLDLALKV VAANMVRTDN SLTGTHLLCA VGRHQEACSQ 1201: LQDSGRWTDA ATLAATHLEG SDYARVLQRW ADHVLHAEHN VWRALILYVA AGSLQEALAA LREVQQPDTV AMFVLACQEI HSEIITELST QDEESESASG 1301: DGTVPLPDLP GLESGKEEVT AVCEYFQQYQ RKLVHLCMDS QPYTD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)