AT3G30820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.909 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis retrotransposon ORF-1 protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Arabidopsis retrotransposon ORF-1 protein; CONTAINS InterPro DOMAIN/s: Arabidopsis retrotransposon ORF-1 protein (InterPro:IPR004312); BEST Arabidopsis thaliana protein match is: Arabidopsis retrotransposon ORF-1 protein (TAIR:AT2G14000.1); Has 20 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:12529843..12531235 | ||||||||||||||||||||
| Molecular Weight (calculated) | 44996.30 Da | ||||||||||||||||||||
| IEP (calculated) | 8.46 | ||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRAKAAAGT RARMSNTEAP TNDDPNKRPI TGTWDGMDTK MLVDLKHIDV KEFIATCRLT YTDPENPKPS QGKLTFILNR KHYSKTLFEI CDIYKTISVA 101: QSEDIHIRSP VVRYVAKVLG SVLHFKPVIA AVTETELPLL FYGVKHLLPA YSDLPAPDTN VAAVLCDTLV KMKNTVLHQP GRASSLYLIR TNFTKPDSQL 201: YQFLGRDGVT YYCRIPNQHI TSFLSATNLA FEPDAQYLVR NPSGAVTRRR QTAAAQPTAD HVVGNDDDHE DYADQAPSTH AQPYLLLPED PAPYLVSSPP 301: AGDDISQQMA WMIESTRKNN SMMHRMCRAI LKIRPCVCTR GGGVDDGDRE HRSKATEDRH AERLVPAAGA STSQTPPEQS LGHRLGRSRR QPGEQSSSES 401: PTHHR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)