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AT3G30530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic leucine-zipper 42
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic leucine-zipper 42 (bZIP42); FUNCTIONS IN: DNA binding, protein homodimerization activity, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 43 (TAIR:AT5G38800.1); Has 1669 Blast hits to 1669 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 133; Fungi - 19; Plants - 1463; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
DNASU:822767eggNOG:ENOG410IZ63eggNOG:ENOG410YWTIEMBL:AB016878EMBL:AB493637EMBL:CP002686EnsemblPlants:AT3G30530
EnsemblPlants:AT3G30530.1entrez:822767GeneID:822767GO:GO:0003700GO:GO:0043565GO:GO:0046982Gramene:AT3G30530.1
hmmpanther:PTHR22952hmmpanther:PTHR22952:SF201HOGENOM:HOG000238858IntAct:Q9LW45InterPro:IPR004827KEGG:ath:AT3G30530ncoils:Coil
OMA:MWLRIENPfam:PF00170Pfscan:PS50217PhylomeDB:Q9LW45PROSITE:PS00036PROSITE:PS50217Proteomes:UP000006548
RefSeq:NP_189674.1scanprosite:PS00036SMART:SM00338SMR:Q9LW45STRING:3702.AT3G30530.1SUPFAM:SSF57959TAIR:AT3G30530
tair10-symbols:ATBZIP42tair10-symbols:bZIP42UniGene:At.53600UniProt:Q9LW45
Coordinates (TAIR10) chr3:+:12139512..12140033
Molecular Weight (calculated) 20302.70 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.95
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK
101: QRHLDELWSQ VMWLRIENHQ LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)