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AT3G30350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Computational
Description (TAIR10)
root meristem growth factor 4 (RGF4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AP001314EMBL:AY088881EMBL:CP002686EnsemblPlants:AT3G30350EnsemblPlants:AT3G30350.1entrez:822736ExpressionAtlas:Q9LI64
GeneID:822736Genevisible:Q9LI64GO:GO:0005615GO:GO:0008083GO:GO:0008284GO:GO:0030154HOGENOM:HOG000176571
InParanoid:Q9LI64Pfam:Q9LI64PRO:PR:Q9LI64Proteomes:UP000006548RefSeq:NP_566853.1TAIR:AT3G30350tair10-symbols:RGF4
UniGene:At.36795UniProt:Q9LI64
Coordinates (TAIR10) chr3:-:11960552..11961764
Molecular Weight (calculated) 18736.40 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.64
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MMRFTIIVIA FLLIIQSLEE EHILVYAHEG GEAGHKSLDY QGDQDSSTLH PKELFDAPRK VRFGRTTRAE KEQVTAMNND SWSFKISGEH KQTNILADHD
101: TTKNTFCKKM MIIVNDLTSL PTLEPSTSTN DMEKLARLLR DDYPIYSKPR RKPPVNNRAP DKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)