AT3G30340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.855 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G01440.1); Has 4418 Blast hits to 4395 proteins in 666 species: Archae - 30; Bacteria - 2090; Metazoa - 4; Fungi - 0; Plants - 1238; Viruses - 0; Other Eukaryotes - 1056 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:11956626..11958969 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40375.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.84 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.56 | ||||||||||||||||||||||||||||||||||||||||
| Length | 364 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKFDTKLWK AVLMMSMINI GLSVVNVMFK KMIDEGLNRM VATTYRLAVG TLFLIPFAIF LERHNRPKLT GRILCSLFFS ALLGTSLVQY FFLIGLEYTS 101: STFSLAFSNM VPSVTFALAL VFRQETLNIK SNVGRAKLLG TMICICGALV LTLYKGTALS REHSTHMETH TRTDSTGAMT QKWAMGSIML VISIIIWSSW 201: FIVQAKISRV YPCQYTSTTI LSFFGVIQSA LLSLISERST SMWVVKDKFQ VLALLYSGIV GSGLCYVGMS WCLRQRGAVF TSSFIPLIQV FAAIFSFSFL 301: HEQIYCGSVI GSMVIIVGLY ILLWGKSKDK SASVTKQEPL DLDIEGCGTA PKELNSTAHQ VSAK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)