AT3G30300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.477 plasma membrane 0.383 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G03810.1); Has 982 Blast hits to 802 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 982; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:11921390..11924254 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76908.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 677 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGEGKVFLK SRMKWIGLLG LVLSAFSLLV HFLLAGFTDD SISDYSIPVT IFSWRPIFDN PRFARHTPLY RRLWGPTRHV ETLLPDANPR GFHSDPPART 101: NGFVFVRIQG GFHEIRNSIP DVVAVSRLLN ATLVIPEIQS TTSSKGISSQ FKSFAYLYNE EHFMATIAND VRVVKTLPKN LKWARRKKQI PSFKVSYGSS 201: PYYYLHHVLP VLIKHSVVEL VVPHGGCLQA ILPSDLEEYQ RLRCRVAFHG LQFRKEVQEL STKVLQRLRP LGRPFIAYDP GMTREALAYH GCAELFQDVH 301: TELIQHKRAW MIKRGIVKGK LSVDSAEQRL AGLCPLMPEE VGILLRAYGY SWDTIIYVAG GEVFGGQRTL IPLHGMFENV VDRTSLSTSW ELAKMYGREA 401: KHNDIKKMTP PSIEVETKHD SLKSTRQRPQ PLPPPPARPK YYNIEGWWGW VAESDNEPES TVIELRTNAH KLLWEAIDYV VSVEADVFIS GFDRDGKGHP 501: SFASLVMGHR LYQSASAKTF RPDRKQIAML LEEIRDHMYE ANHTWITSVR KLLKRSILEG LMESSKRSKA FSFLSHPVPE CSCITRTHPV SNATNLGVTH 601: RCPQWVDGAV SERLKEYKNA EKEEDLDEED LSSSGLFFGH KESGGNNNGN NETVNSEANN KEEGQLEDQE ELEGSER |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)