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AT3G30260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 79
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 79 (AGL79); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 7337 Blast hits to 7335 proteins in 920 species: Archae - 0; Bacteria - 2; Metazoa - 637; Fungi - 301; Plants - 6322; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
DIP:DIP-51551NeggNOG:COG5068eggNOG:KOG0014EMBL:AY141238EMBL:CP002686EnsemblPlants:AT3G30260EnsemblPlants:AT3G30260.1
entrez:822726GeneID:822726GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT3G30260.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF218IntAct:Q7X9H6InterPro:IPR002100InterPro:IPR002487KEGG:ath:AT3G30260ncoils:Coil
OMA:LMVESIAPfam:PF00319Pfam:PF01486Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q7X9H6PRINTS:PR00404
PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297Proteomes:UP000006548RefSeq:NP_189645.2scanprosite:PS00350SMART:SM00432
SMR:Q7X9H6STRING:3702.AT3G30260.1SUPFAM:SSF55455TAIR:AT3G30260tair10-symbols:AGL79UniGene:At.36813UniProt:Q7X9H6
Coordinates (TAIR10) chr3:+:11909119..11912880
Molecular Weight (calculated) 28076.80 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.69
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD AEVALIVFSP KGKLFEYSAG SSMERILDRY ERSAYAGQDI PTPNLDSQGE CSTECSKLLR
101: MIDVLQRSLR HLRGEEVDGL SIRDLQGVEM QLDTALKKTR SRKNQLMVES IAQLQKKEKE LKELKKQLTK KAGEREDFQT QNLSHDLASL ATPPFESPHE
201: LRRTISPPPP PLSSGDTSQR DGVGEVAAGT LIRRTNATLP HWMPQLTGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)