suba logo
AT3G29575.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABI five binding protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABI five binding protein 3 (AFP3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1); Has 196 Blast hits to 190 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 184; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioGrid:7947DIP:DIP-40552NeggNOG:ENOG410IWD6eggNOG:ENOG410YWGTEMBL:AF385741EMBL:AK317411EMBL:AP002457
EMBL:AY133676EMBL:CP002686EnsemblPlants:AT3G29575EnsemblPlants:AT3G29575.1EnsemblPlants:AT3G29575.3EnsemblPlants:AT3G29575.4entrez:822619
GeneID:822619Genevisible:Q94F39GO:GO:0005634GO:GO:0007165Gramene:AT3G29575.1Gramene:AT3G29575.3Gramene:AT3G29575.4
hmmpanther:PTHR31413hmmpanther:PTHR31413:SF0HOGENOM:HOG000239856InParanoid:Q94F39IntAct:Q94F39InterPro:IPR012463InterPro:IPR031307
InterPro:IPR032308InterPro:IPR032310KEGG:ath:AT3G29575ncoils:CoilOMA:PSEQEHEPANTHER:PTHR31413PaxDb:Q94F39
Pfam:PF07897Pfam:PF16135Pfam:PF16136Pfam:Q94F39PhylomeDB:Q94F39PRIDE:Q94F39PRO:PR:Q94F39
Proteomes:UP000006548RefSeq:NP_001030794.1RefSeq:NP_001078222.1RefSeq:NP_189598.1STRING:3702.AT3G29575.1TAIR:AT3G29575tair10-symbols:AFP3
UniGene:At.6431UniProt:Q94F39
Coordinates (TAIR10) chr3:-:11382416..11383657
Molecular Weight (calculated) 25244.90 Da
IEP (calculated) 7.98
GRAVY (calculated) -0.62
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)