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AT3G29390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RS2-interacting KH protein
Curator
Summary (TAIR10)
Nuclear localized K-homology containing protein that interacts with AS1.
Computational
Description (TAIR10)
RS2-interacting KH protein (RIK); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 9708 Blast hits to 6008 proteins in 528 species: Archae - 14; Bacteria - 833; Metazoa - 2799; Fungi - 1318; Plants - 2564; Viruses - 582; Other Eukaryotes - 1598 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HJ7eggNOG:KOG1960EMBL:AP001309EMBL:AY065141EMBL:AY081591EMBL:AY940684EMBL:CP002686
EnsemblPlants:AT3G29390EnsemblPlants:AT3G29390.1entrez:822600Gene3D:3.30.1370.10GeneID:822600Genevisible:Q9LIA4GO:GO:0003723
GO:GO:0005634hmmpanther:PTHR15744hmmpanther:PTHR15744:SF0HOGENOM:HOG000239854InParanoid:Q9LIA4IntAct:Q9LIA4InterPro:IPR004088
InterPro:IPR031121iPTMnet:Q9LIA4KEGG:ath:AT3G29390OMA:QSELAMTPANTHER:PTHR15744:SF0PaxDb:Q9LIA4Pfam:Q9LIA4
PhylomeDB:Q9LIA4PRIDE:Q9LIA4PRO:PR:Q9LIA4ProteinModelPortal:Q9LIA4Proteomes:UP000006548RefSeq:NP_566850.3SMR:Q9LIA4
STRING:3702.AT3G29390.1SUPFAM:SSF54791TAIR:AT3G29390tair10-symbols:RIKUniGene:At.21201UniProt:Q9LIA4
Coordinates (TAIR10) chr3:+:11289675..11294524
Molecular Weight (calculated) 62538.70 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.51
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEDNDEARV PLSDSSTTND ASRTRQRRKR KWDKPAEQLV AAGVAFPQLL PLGNTMNVPS MSPLLQTLSV PLAVPKVNQP KIQDEVIIAR EIVINDAEAS
101: LRHRLTKRST QEDIQRSTGA VVITRGKYRP PNAPPDGEKP LYLHISAAAQ LQLKETTERI LAVDRAAAMI EEMMKQKSIS QIGSVGLQTV KMLSTCVYLG
201: FEADPSSNVA ARIRGPNDQY INHIMNETGA TVVLRGRGSG SLENQHGDEA QLPLHLLLSG SNPKSIDDAK RLAENLMDTI SVEFGASRVS SSKVYGAVPP
301: PQQLISGAPG SDQENQNLIS TYGLMTSIPI TAPPYAVSSF PVTPATSLYP QFPVMQSLGI SNGGPSQPVA GGTSYSGYAG IYPQATPLQQ VAQVLKQSIS
401: PVISTVPPTM LTATSLSIPS DNASNEMERR PPRKRKFQEL PADCKVPEKD KQQSELAMTG DVTPSANRVR SPPSPRSVMP PPPPKTIAPP PSKTMSPPSS
501: KSMLPPPPRS KTMSPLSSKS MLPPPPRFTL TTQRSRLQDN HISVKKPNPV PDTLIKLMEY GDDEDDDDDP DEPLTTRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)