suba logo
AT3G29330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.726
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 37 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AY600584EMBL:CP002686EnsemblPlants:AT3G29330EnsemblPlants:AT3G29330.1
entrez:822591ExpressionAtlas:Q6E239GeneID:822591Gramene:AT3G29330.1
Proteomes:UP000006548RefSeq:NP_189579.2STRING:3702.AT3G29330.2TAIR:AT3G29330
UniGene:At.50847UniGene:At.5745UniProt:Q6E239
Coordinates (TAIR10) chr3:-:11257944..11259053
Molecular Weight (calculated) 14564.70 Da
IEP (calculated) 3.92
GRAVY (calculated) -0.48
Length 133 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYNSQWQQP PAPAIQPPEM NQSTAVDAYY ASYYGYYANP NPSSISDLQT YESSAIAIPP PPGVVDSTAA VIATTSYVTV DTTPYYTLDM NAQQNSAWPD
101: LIEQSHSIYP PDFSWTGHIV QAQLPGTKKG KPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)