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AT3G29280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.978
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWGReggNOG:ENOG4111PUXEMBL:CP002686EnsemblPlants:AT3G29280
EnsemblPlants:AT3G29280.1entrez:822585GeneID:822585Gramene:AT3G29280.1
hmmpanther:PTHR37738hmmpanther:PTHR37738:SF1InParanoid:F4J303KEGG:ath:AT3G29280
OMA:IVECRGHPaxDb:F4J303PRIDE:F4J303Proteomes:UP000006548
RefSeq:NP_189574.2TAIR:AT3G29280UniGene:At.53565UniProt:F4J303
Coordinates (TAIR10) chr3:-:11236705..11237947
Molecular Weight (calculated) 19692.40 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.46
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEGREGEIE KKKKKDEEGE VKEGVASIAL LPCGTISGHF IQMPSSICYG LHGTELACET ECSRGEDYRL IKLTIIDYNR KKEQTVVVEC KGHDAARIND
101: VEHAHGWEED VIGLVEEKHG KKKVSVSFEC ETLKADEAAE DHIRQFMPKL AGLDAVINIG PMKISGLDFA AVEEGHIN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)