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AT3G29270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G69330.1); Has 253 Blast hits to 253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHQ9eggNOG:ENOG4111M5CEMBL:AK229795EMBL:BT002808EMBL:BT004444EMBL:CP002686EMBL:DQ086861
EnsemblPlants:AT3G29270EnsemblPlants:AT3G29270.1EnsemblPlants:AT3G29270.2entrez:822584Gene3D:3.30.40.10GeneID:822584GO:GO:0004842
GO:GO:0008270GO:GO:0016021GO:GO:0016567Gramene:AT3G29270.1Gramene:AT3G29270.2hmmpanther:PTHR13139hmmpanther:PTHR13139:SF47
HOGENOM:HOG000239847IntAct:Q84JZ7InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907InterPro:IPR027370KEGG:ath:AT3G29270
OMA:NDHTRETPfam:PF13445Pfscan:PS50089PhylomeDB:Q84JZ7PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_189573.1RefSeq:NP_974376.1scanprosite:PS00518SMR:Q84JZ7STRING:3702.AT3G29270.1SUPFAM:SSF57850TAIR:AT3G29270
TMHMM:TMhelixUniGene:At.23991UniProt:Q84JZ7
Coordinates (TAIR10) chr3:+:11235326..11236117
Molecular Weight (calculated) 30057.70 Da
IEP (calculated) 8.11
GRAVY (calculated) 0.07
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSIPDTRMW NLASSYLTGN IGPKNDIRRP VHAHAECSDD DVSSVGSKDE GLECPICWES FNIVENVPYV LWCGHTMCKN CILGLQWAIV KLPTHPVQLP
101: LFISCPWCNL LSFRLVFRGT LRFPHKNYFV LWMVERMNGE RRNSPGGAQT DGNNDHTRET PSPCLHNRHH RSQPEPSRSV NDHRIPRDNI QTSLRKSLVF
201: FVQLTAKFPL VVIFLLIILY AIPTSAAILA MYILVTLLLA LPSFLILYFA YPCLDWLVRE IVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)