AT3G29240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF179) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF179); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 1065 Blast hits to 1065 proteins in 382 species: Archae - 0; Bacteria - 730; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:11191780..11192868 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34553.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||
| Length | 317 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDACFLTSRS ISGVKELVPF IKARIFTCPK RNSGQFVTRK VASPISVNCS LSDSWKPLED DADLFKDCVN NSTSDADWRE FRARLVAGEQ AATSEKDQPS 101: WSNPDMVVDY QPSSSSLITI GSKWAHKIHE PETGCLLIAT EKLDGVHIFE KTVILLLSVG PSGPIGVILN RPSLMSIKET KSTILDMAGT FSDKRLFFGG 201: PLEEGLFLVS PRSGGDNEVG KSGVFRQVMK GLYYGTRESV GLAAEMVKRN LVGRSELRFF DGYCGWEKEQ LKAEILGGYW TVAACSSTVV ELGSAVQSHG 301: LWDEVLGLIG PQTGSVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)