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AT3G29230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g29230-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 41738 Blast hits to 14344 proteins in 280 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 161; Plants - 40664; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB026657EMBL:CP002686
EnsemblPlants:AT3G29230EnsemblPlants:AT3G29230.1entrez:822578Gene3D:1.25.40.10
GeneID:822578Genevisible:Q9LS72Gramene:AT3G29230.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF887HOGENOM:HOG000237569InParanoid:Q9LS72InterPro:IPR002885
InterPro:IPR011990iPTMnet:Q9LS72KEGG:ath:AT3G29230OMA:DPNVHLY
PaxDb:Q9LS72Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q9LS72Pfscan:PS51375PhylomeDB:Q9LS72PRIDE:Q9LS72
PRO:PR:Q9LS72PROSITE:PS51375ProteinModelPortal:Q9LS72Proteomes:UP000006548
RefSeq:NP_189568.1SMR:Q9LS72STRING:3702.AT3G29230.1TAIR:AT3G29230
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65178UniProt:Q9LS72
Coordinates (TAIR10) chr3:+:11188803..11190605
Molecular Weight (calculated) 67342.00 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.09
Length 600 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSLPVRAP SWVSSRRIFE ERLQDLPKCA NLNQVKQLHA QIIRRNLHED LHIAPKLISA LSLCRQTNLA VRVFNQVQEP NVHLCNSLIR AHAQNSQPYQ
101: AFFVFSEMQR FGLFADNFTY PFLLKACSGQ SWLPVVKMMH NHIEKLGLSS DIYVPNALID CYSRCGGLGV RDAMKLFEKM SERDTVSWNS MLGGLVKAGE
201: LRDARRLFDE MPQRDLISWN TMLDGYARCR EMSKAFELFE KMPERNTVSW STMVMGYSKA GDMEMARVMF DKMPLPAKNV VTWTIIIAGY AEKGLLKEAD
301: RLVDQMVASG LKFDAAAVIS ILAACTESGL LSLGMRIHSI LKRSNLGSNA YVLNALLDMY AKCGNLKKAF DVFNDIPKKD LVSWNTMLHG LGVHGHGKEA
401: IELFSRMRRE GIRPDKVTFI AVLCSCNHAG LIDEGIDYFY SMEKVYDLVP QVEHYGCLVD LLGRVGRLKE AIKVVQTMPM EPNVVIWGAL LGACRMHNEV
501: DIAKEVLDNL VKLDPCDPGN YSLLSNIYAA AEDWEGVADI RSKMKSMGVE KPSGASSVEL EDGIHEFTVF DKSHPKSDQI YQMLGSLIEP PDPGELVAVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)