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AT3G29185.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF3598)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF3598 (InterPro:IPR022017); Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 52; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G29185EnsemblPlants:AT3G29185.1entrez:822570
ExpressionAtlas:F4J1U2Gene3D:2.40.128.20GeneID:822570Gramene:AT3G29185.1
hmmpanther:PTHR33404hmmpanther:PTHR33404:SF3InterPro:IPR011038InterPro:IPR012674
InterPro:IPR022017KEGG:ath:AT3G29185Pfam:PF12204PhylomeDB:F4J1U2
PRIDE:F4J1U2ProteinModelPortal:F4J1U2Proteomes:UP000006548RefSeq:NP_189563.2
SMR:F4J1U2SUPFAM:SSF50814TAIR:AT3G29185UniGene:At.36959
UniProt:F4J1U2
Coordinates (TAIR10) chr3:-:11155092..11157207
Molecular Weight (calculated) 44678.80 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.48
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAATSFTCS LPFTPLSKSL KPIRSPILRS DYGTSRSFVI RSMTVQEDDK RTSDESMSID NLRGFVDLNV GKWTGSFHQF DGNGNLLHKI DTRLSASSYG
101: EDELLSLNQS LYIKQPTSAT SVSEEEEEEP EWVEYKIKET NMFTVDKYQQ IGFFPKERAF SLRYQTAGML DTTLRQGVLG EDDTGEESPR NLKLPSRRPS
201: LVCENCLYSK EIDRRARAFH IMDPKGVLEM LIVFLEERGL ENLAHPVLDN AQNDAERINP FLGTWKGRSV TKRSGVYGAT LSEADTVAVL EMNDKGQVVQ
301: DISSTSDEKK VTTNVHWEGK MSKDLVTFAE GYQMTLLPGG MYMGCPCDVS KCVADLKSFH LEFCWLESPS SRQRLIRTYD HEGLAVSSTY FTETKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)