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AT3G29170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.382
golgi 0.328
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic protein of unknown function (DUF872)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT2G19350.1); Has 245 Blast hits to 245 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111TWAeggNOG:KOG4753EMBL:AB018121EMBL:AK176694
EMBL:AK176774EMBL:AY084813EMBL:BT028880EMBL:CP002686
EnsemblPlants:AT3G29170EnsemblPlants:AT3G29170.1entrez:822567GeneID:822567
GO:GO:0016021Gramene:AT3G29170.1hmmpanther:PTHR15664hmmpanther:PTHR15664:SF3
HOGENOM:HOG000231663InterPro:IPR008590KEGG:ath:AT3G29170OMA:GSIMFIP
Pfam:PF05915PhylomeDB:Q9LVP2Proteomes:UP000006548RefSeq:NP_566844.1
STRING:3702.AT3G29170.1TAIR:AT3G29170TMHMM:TMhelixUniGene:At.31555
UniGene:At.36960UniProt:Q9LVP2
Coordinates (TAIR10) chr3:-:11136240..11137542
Molecular Weight (calculated) 13758.40 Da
IEP (calculated) 5.11
GRAVY (calculated) 0.06
Length 121 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRRSVRYA QLPGDEDDEG YGNGVGERRD FDPRFDYSPK AFDRVPWKSI ALAVFLLFLG CLLLLLSFFI FIGHMEGDSS QGYALLVLGI LTFLPGFYET
101: RIAYYSWRGA EGYRFAAIPS Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)