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AT3G29090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.959
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pectin methylesterase 31
Curator
Summary (TAIR10)
Encodes an atypical pectin methylesterase that does not require salt for its activity and has a blockwise mode of pectin demethylesterification.
Computational
Description (TAIR10)
pectin methylesterase 31 (PME31); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pectin metabolic process; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 2575 Blast hits to 2532 proteins in 376 species: Archae - 8; Bacteria - 733; Metazoa - 1; Fungi - 195; Plants - 1611; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G29090-MONOMERBioGrid:7885EC:3.1.1.11eggNOG:COG4677
eggNOG:ENOG410IKYQEMBL:AB018121EMBL:AY070091EMBL:AY084418
EMBL:AY096561EMBL:CP002686EnsemblPlants:AT3G29090EnsemblPlants:AT3G29090.1
entrez:822556Gene3D:2.160.20.10GeneID:822556Genevisible:Q9LVQ0
GO:GO:0005618GO:GO:0030599GO:GO:0042545GO:GO:0045330
GO:GO:0045488GO:GO:0045490GO:GO:0050829Gramene:AT3G29090.1
gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31321hmmpanther:PTHR31321:SF12
HOGENOM:HOG000217409InParanoid:Q9LVQ0IntAct:Q9LVQ0InterPro:IPR000070
InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT3G29090KO:K01051OMA:FMDRCIK
PaxDb:Q9LVQ0Pfam:PF01095Pfam:Q9LVQ0PhylomeDB:Q9LVQ0
PRIDE:Q9LVQ0PRO:PR:Q9LVQ0PROSITE:PS00503ProteinModelPortal:Q9LVQ0
Proteomes:UP000006548RefSeq:NP_566842.1scanprosite:PS00503SMR:Q9LVQ0
STRING:3702.AT3G29090.1SUPFAM:SSF51126TAIR:AT3G29090tair10-symbols:ATPME31
tair10-symbols:PME31UniGene:At.28398UniPathway:UPA00545UniProt:Q9LVQ0
Coordinates (TAIR10) chr3:+:11073804..11075335
Molecular Weight (calculated) 35521.90 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.28
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTRMVRVS QDGSGDYCSV QDAIDSVPLG NTCRTVIRLS PGIYRQPVYV PKRKNFITFA GISPEITVLT WNNTASKIEH HQASRVIGTG TFGCGSVIVE
101: GEDFIAENIT FENSAPEGSG QAVAIRVTAD RCAFYNCRFL GWQDTLYLHH GKQYLKDCYI EGSVDFIFGN STALLEHCHI HCKSQGFITA QSRKSSQEST
201: GYVFLRCVIT GNGQSGYMYL GRPWGPFGRV VLAYTYMDAC IRNVGWHNWG NAENERSACF YEYRCFGPGS CSSERVPWSR ELMDDEAGHF VHHSFVDPEQ
301: DRPWLCLRMG VKTPYSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)