AT3G29075.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycine-rich protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39570.1); Has 110108 Blast hits to 41750 proteins in 1670 species: Archae - 199; Bacteria - 11749; Metazoa - 34760; Fungi - 10185; Plants - 5903; Viruses - 764; Other Eukaryotes - 46548 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11051645..11052629 | ||||||||||||||||||||
| Molecular Weight (calculated) | 34453.10 Da | ||||||||||||||||||||
| IEP (calculated) | 6.02 | ||||||||||||||||||||
| GRAVY (calculated) | -2.29 | ||||||||||||||||||||
| Length | 294 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPYYTNDDND VDDFTEYDPM PYSGGYDITV TYGRSIPPSD ETCYPLSSLS GDAFEYQRPN FSSNHDSSAY DDQALKTEYS SYARPGPVGS GSDFGRKPNS 101: GYGGRTEVEY GRKTESEHGS GYGGRIESDY VKPSYGGHED DGDDGHKKHS GKDYDDGDEK SKKKEKEKKK DKKKDGNNSE DDEFKKKKKK EQYKEHHDDD 201: DYDEKKKKKK DYNDDDEKKK KKHYNDDDDE KKKKHNYNDD DDEKKKKKEY HDDEDKKKKK HYDNDDDEKK KKKDHRDDDD EKKKKKDKHH KGHD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)