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AT3G28970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.932
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF298)
Curator
Summary (TAIR10)
Identified in a screen for mutants resistant to an anti-auxin. Encodes a protein with unknown function that shares homology with DCN protein family.
Computational
Description (TAIR10)
antiauxin-resistant 3 (AAR3); CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 786 Blast hits to 786 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 464; Fungi - 133; Plants - 125; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTIJeggNOG:KOG3077EMBL:AB025615EMBL:AK118926EMBL:BT005690EMBL:CP002686EnsemblPlants:AT3G28970
EnsemblPlants:AT3G28970.1entrez:822537GeneID:822537GO:GO:0000151GO:GO:0005634GO:GO:0009734GO:GO:0031624
GO:GO:0032182GO:GO:0045116GO:GO:0051443GO:GO:0097602Gramene:AT3G28970.1hmmpanther:PTHR12281HOGENOM:HOG000238944
InterPro:IPR005176InterPro:IPR014764KEGG:ath:AT3G28970KO:K17822OMA:ITAWKLVPANTHER:PTHR12281Pfam:PF03556
Pfscan:PS51229PhylomeDB:Q9MBG8PROSITE:PS51229Proteomes:UP000006548RefSeq:NP_189539.1SMR:Q9MBG8STRING:3702.AT3G28970.1
TAIR:AT3G28970tair10-symbols:AAR3UniGene:At.46826UniProt:Q9MBG8
Coordinates (TAIR10) chr3:-:10987970..10989782
Molecular Weight (calculated) 34373.40 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.64
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSPVSARF DIFEIYRRFC AIRSGQQLCN KKPCDGEESQ RFNLSKEAIT QLLYLVENKF QARNSIFDEL FKLMSRLDLM VDFTEFTCFY DFVFFMCREN
101: GQKNITISRA ITAWKLVLAG RFRLLNRWCD FIEKNQRHNI SEDTWQQVLA FSRCVHENLE GYDSEGAWPV LIDDFVEHMY SILGPNKDTS LFCKCGDTES
201: ESCLYQEDEH HKDYRRPHTG LRNIPGLKRK TSKKNDEEEE DEDEEVLETQ NSSSLLNFKR IKTSNSPRCS SKSPCSIERS LSQGFASLLS TGDKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)