AT3G28970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF298) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Identified in a screen for mutants resistant to an anti-auxin. Encodes a protein with unknown function that shares homology with DCN protein family. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
antiauxin-resistant 3 (AAR3); CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12760.1); Has 786 Blast hits to 786 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 464; Fungi - 133; Plants - 125; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10987970..10989782 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34373.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.50 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSSPVSARF DIFEIYRRFC AIRSGQQLCN KKPCDGEESQ RFNLSKEAIT QLLYLVENKF QARNSIFDEL FKLMSRLDLM VDFTEFTCFY DFVFFMCREN 101: GQKNITISRA ITAWKLVLAG RFRLLNRWCD FIEKNQRHNI SEDTWQQVLA FSRCVHENLE GYDSEGAWPV LIDDFVEHMY SILGPNKDTS LFCKCGDTES 201: ESCLYQEDEH HKDYRRPHTG LRNIPGLKRK TSKKNDEEEE DEDEEVLETQ NSSSLLNFKR IKTSNSPRCS SKSPCSIERS LSQGFASLLS TGDKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)