AT3G28870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.678 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Sec63 domain (InterPro:IPR004179); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24260.1); Has 531 Blast hits to 527 proteins in 118 species: Archae - 0; Bacteria - 10; Metazoa - 251; Fungi - 29; Plants - 170; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10890355..10891839 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40904.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.59 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADADEKMKT IGMNQSPWEQ TRFRSLIQEF NFRVLGIPEL TRDLMRLKDN ILNRKINADK QEENPNLNDP KMRPRIRIRS KLVDNPKDRL EAKQKLTELL 101: KALEERLTRS ELRVYTNLCK DLKSQIAYGD KEDEAVTRVK GHKNLTDIEE DMYKWEDEMF EVDMLMRVLT SAVESAKEVI KGEMELKDLG AKFYRCVEML 201: YGEDMFETVT EDHQRALPMI LSRLKQKLRH VTTARERLKP LWKQTIEKLS TNQRGSTISS EDNNNLVLEC NFISKPDGDS GHVGAGLYAS AAPSLHKGLG 301: QELKAKVKLD FTVPSEPGEK SYTLYFMCDS YLGCDQEYSF SVDDKGSGVG DHMEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)