AT3G28790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28830.1); Has 177545 Blast hits to 90545 proteins in 3397 species: Archae - 691; Bacteria - 36593; Metazoa - 57458; Fungi - 33385; Plants - 8167; Viruses - 3173; Other Eukaryotes - 38078 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10813577..10815588 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 62769.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKNLLAICL VFMVASSVVY EVQGTFLLKL YLRRKFPRRC IDFAPYAGKG MLMLVSNLEG GCPATREFKQ FFSTFKSYMS FISSASISAS KNIDVEMNGR 101: CELLSKAMSA LTGSKSSQSS ELKMTMLSMG KTLVEQKRQG SRMMSLKQKK ELVVAMVKWT RMVITFVKSV AEKRGKSIDE SSYGLDVDVN ASIGSSSGSD 201: GSSSSDNESS SNTKSQGTSS KSGSESTAGS IETNTGSKTE AGSKSSSSAK TKEVSGGSSG NTYKDTTGSS SGASPSGSPT PTPSTPTPST PTPSTPTPST 301: PTPSTPTPST PAPSTPAAGK TSEKGSESAS MKKESNSKSE SESAASGSVS KTKETNKGSS GDTYKDTTGT SSGSPSGSPS GSPTPSTSTD GKASSKGSAS 401: ASAGASASAS AGASASAEES AASQKKESNS KSSSSSSSTT SVKEVETQTS SEVNSFISNL EKKYTGNSEL KVFFEKLKTS MSASAKLSTS NAKELVTGMR 501: SAASKIAEAM MFVSSRFSKS EETKTSMASC QQEVMQSLKE LQDINSQIVS GKTVTSTQQT ELKQTITKWE QVTTQFVETA ASSSSSSSSS SSSSSSSSQG 601: SAKMAMKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)