AT3G28780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28840.1); Has 491362 Blast hits to 127895 proteins in 3934 species: Archae - 1891; Bacteria - 181160; Metazoa - 101488; Fungi - 34030; Plants - 43823; Viruses - 7305; Other Eukaryotes - 121665 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10806131..10808369 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61332.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 3.92 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||
| Length | 674 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARFPIAICL MLILVASSTI YEAQGVFLLR HYMNKFPKNS QDFEPFAYKG MLSFVDNLEN MAPEKGEYKD FFSKLKAFMS FINTAKGSSS EFQSQMKQQA 101: EGLFKAISAL GVKGGSSADT SKLIESLMSM GKTFAEFKRS GATMMTSEQR RELVTSMAKW AQVIGQFVKK VGDQNGDGAK IDLSSLLGGG SSGLGSSGDS 201: GSPGSDSGSP SADTGSPTDG GSYGDTTGDS GSSAGSPSYP SDDGSGSTAG GPSGSTTDGS AGGESSMGGD SSSAGAAGES GSAATADSGD AAGADSGGAA 301: GADSGGAASA DSGGAAAGET ASGGAAAADT SGGSAETGGE SASGGAASGA GAASGASAKT GGESGEAASG GSAETGGESA SAGAASGGSA ETGGESGSGG 401: AASGGESASG GATSGGSPET GGSAETGGES ASGGAASGGE SASGGAASSG SVESGGESTG ATSGGSAETS DESASGGAAS GGESASGGAA SGGSAETGGE 501: STSSGVASGG STGSESASAG AASGGSTEAN GGAAAGGSTE AGSGTSTETS SMGGGSAAAG GVSESSSGGS TAAGGTSESA SGGSATAGGA SGGTYTDSTG 601: GSPTGSPSAG GPSGSASESS MEGGTFGGQS MGGQAGSASY QSTNYQKTHS KSAGKSSVSH SSEEKSSDSA NADS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)