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AT3G28730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : high mobility group
Curator
Summary (TAIR10)
encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC.
Computational
Description (TAIR10)
high mobility group (HMG); CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein (InterPro:IPR000969), High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B1 (TAIR:AT3G51880.2); Has 8066 Blast hits to 7188 proteins in 653 species: Archae - 0; Bacteria - 14; Metazoa - 5623; Fungi - 822; Plants - 671; Viruses - 15; Other Eukaryotes - 921 (source: NCBI BLink).
Protein Annotations
BioGrid:7834eggNOG:COG5165eggNOG:COG5648eggNOG:KOG0526
EMBL:AK221855EMBL:AK318679EMBL:AP002057EMBL:BT002507
EMBL:CP002686EMBL:D13491EnsemblPlants:AT3G28730EnsemblPlants:AT3G28730.1
entrez:822505Gene3D:1.10.30.10Gene3D:2.30.29.30GeneID:822505
Genevisible:Q05153GO:GO:0000741GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005719GO:GO:0006260GO:GO:0006281
GO:GO:0006351GO:GO:0010197GO:GO:0010228GO:GO:0035101
hmmpanther:PTHR13711hmmpanther:PTHR13711:SF199HOGENOM:HOG000241245InParanoid:Q05153
InterPro:IPR000969InterPro:IPR009071InterPro:IPR011993InterPro:IPR013719
InterPro:IPR024954KEGG:ath:AT3G28730KO:K09272OMA:EQNIIFK
PaxDb:Q05153Pfam:PF00505Pfam:PF03531Pfam:PF08512
Pfam:Q05153Pfscan:PS50118PhylomeDB:Q05153PIR:S35511
PRIDE:Q05153PRINTS:PR00887PRO:PR:Q05153PROSITE:PS50118
ProteinModelPortal:Q05153Proteomes:UP000006548Reactome:R-ATH-674695RefSeq:NP_189515.1
SMART:SM00398SMART:SM01287SMR:Q05153STRING:3702.AT3G28730.1
SUPFAM:SSF47095SUPFAM:SSF50729TAIR:AT3G28730tair10-symbols:ATHMG
tair10-symbols:HMGtair10-symbols:NFDtair10-symbols:SSRP1UniGene:At.21931
UniGene:At.48716UniProt:Q05153
Coordinates (TAIR10) chr3:+:10784954..10788498
Molecular Weight (calculated) 71649.90 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.66
Length 646 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGHSFNNI SLSGRGGKNP GLLKINSGGI QWKKQGGGKA VEVDRSDIVS VSWTKVTKSN QLGVKTKDGL YYKFVGFRDQ DVPSLSSFFQ SSYGKTPDEK
101: QLSVSGRNWG EVDLHGNTLT FLVGSKQAFE VSLADVSQTQ LQGKNDVTLE FHVDDTAGAN EKDSLMEISF HIPNSNTQFV GDENRPPSQV FNDTIVAMAD
201: VSPGVEDAVV TFESIAILTP RGRYNVELHL SFLRLQGQAN DFKIQYSSVV RLFLLPKSNQ PHTFVVISLD PPIRKGQTMY PHIVMQFETD TVVESELSIS
301: DELMNTKFKD KLERSYKGLI HEVFTTVLRW LSGAKITKPG KFRSSQDGFA VKSSLKAEDG VLYPLEKGFF FLPKPPTLIL HDEIDYVEFE RHAAGGANMH
401: YFDLLIRLKT DHEHLFRNIQ RNEYHNLYTF ISSKGLKIMN LGGAGTADGV AAVLGDNDDD DAVDPHLTRI RNQAADESDE EDEDFVMGED DDGGSPTDDS
501: GGDDSDASEG GVGEIKEKSI KKEPKKEASS SKGLPPKRKT VAADEGSSKR KKPKKKKDPN APKRAMSGFM FFSQMERDNI KKEHPGIAFG EVGKVLGDKW
601: RQMSADDKEP YEAKAQVDKQ RYKDEISDYK NPQPMNVDSG NDSDSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)